FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9429, 560 aa
  1>>>pF1KB9429 560 - 560 aa - 560 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0804+/-0.000871; mu= 12.4044+/- 0.053
 mean_var=143.1101+/-28.330, 0's: 0 Z-trim(111.5): 28  B-trim: 124 in 2/51
 Lambda= 0.107211
 statistics sampled from 12385 (12397) to 12385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.381), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS32632.1 AATF gene_id:26574|Hs108|chr17         ( 560) 3710 585.5 5.8e-167


>>CCDS32632.1 AATF gene_id:26574|Hs108|chr17              (560 aa)
 initn: 3710 init1: 3710 opt: 3710  Z-score: 3111.0  bits: 585.5 E(32554): 5.8e-167
Smith-Waterman score: 3710; 100.0% identity (100.0% similar) in 560 aa overlap (1-560:1-560)

               10        20        30        40        50        60
pF1KB9 MAGPQPLALQLEQLLNPRPSEADPEADPEEATAARVIDRFDEGEDGEGDFLVVGSIRKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAGPQPLALQLEQLLNPRPSEADPEADPEEATAARVIDRFDEGEDGEGDFLVVGSIRKLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SASLLDTDKRYCGKTTSRKAWNEDHWEQTLPGSSDEEISDEEGSGDEDSEGLGLEEYDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SASLLDTDKRYCGKTTSRKAWNEDHWEQTLPGSSDEEISDEEGSGDEDSEGLGLEEYDED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DLGAAEEQECGDHRESKKSRSHSAKTPGFSVQSISDFEKFTKGMDDLGSSEEEEDEESGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DLGAAEEQECGDHRESKKSRSHSAKTPGFSVQSISDFEKFTKGMDDLGSSEEEEDEESGM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EEGDDAEDSQGESEEDRAGDRNSEDDGVVMTFSSVKVSEEVEKGRAVKNQIALWDQLLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEGDDAEDSQGESEEDRAGDRNSEDDGVVMTFSSVKVSEEVEKGRAVKNQIALWDQLLEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RIKLQKALLTTNQLPQPDVFPLFKDKGGPEFSSALKNSHKALKALLRSLVGLQEELLFQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RIKLQKALLTTNQLPQPDVFPLFKDKGGPEFSSALKNSHKALKALLRSLVGLQEELLFQY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 PDTRYLVDGTKPNAGSEEISSEDDELVEEKKQQRRRVPAKRKLEMEDYPSFMAKRFADFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PDTRYLVDGTKPNAGSEEISSEDDELVEEKKQQRRRVPAKRKLEMEDYPSFMAKRFADFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VYRNRTLQKWHDKTKLASGKLGKGFGAFERSILTQIDHILMDKERLLRRTQTKRSVYRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VYRNRTLQKWHDKTKLASGKLGKGFGAFERSILTQIDHILMDKERLLRRTQTKRSVYRVL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 GKPEPAAQPVPESLPGEPEILPQAPANAHLKDLDEEIFDDDDFYHQLLRELIERKTSSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GKPEPAAQPVPESLPGEPEILPQAPANAHLKDLDEEIFDDDDFYHQLLRELIERKTSSLD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 PNDQVAMGRQWLAIQKLRSKIHKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTTMNDDAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PNDQVAMGRQWLAIQKLRSKIHKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTTMNDDAR
              490       500       510       520       530       540

              550       560
pF1KB9 TELYRSLFGQLHPPDEGHGD
       ::::::::::::::::::::
CCDS32 TELYRSLFGQLHPPDEGHGD
              550       560




560 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:20:12 2016 done: Thu Nov  3 23:20:13 2016
 Total Scan time:  3.550 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]