FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9429, 560 aa
  1>>>pF1KB9429 560 - 560 aa - 560 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1792+/-0.000367; mu= 11.7141+/- 0.023
 mean_var=155.1831+/-30.478, 0's: 0 Z-trim(118.9): 53  B-trim: 0 in 0/53
 Lambda= 0.102956
 statistics sampled from 32240 (32293) to 32240 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.379), width:  16
 Scan time: 10.810

The best scores are:                                      opt bits E(85289)
NP_036270 (OMIM: 608463) protein AATF [Homo sapien ( 560) 3710 563.1 8.5e-160
XP_011522913 (OMIM: 608463) PREDICTED: protein AAT ( 536) 3419 519.8 8.4e-147


>>NP_036270 (OMIM: 608463) protein AATF [Homo sapiens]    (560 aa)
 initn: 3710 init1: 3710 opt: 3710  Z-score: 2989.9  bits: 563.1 E(85289): 8.5e-160
Smith-Waterman score: 3710; 100.0% identity (100.0% similar) in 560 aa overlap (1-560:1-560)

               10        20        30        40        50        60
pF1KB9 MAGPQPLALQLEQLLNPRPSEADPEADPEEATAARVIDRFDEGEDGEGDFLVVGSIRKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAGPQPLALQLEQLLNPRPSEADPEADPEEATAARVIDRFDEGEDGEGDFLVVGSIRKLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SASLLDTDKRYCGKTTSRKAWNEDHWEQTLPGSSDEEISDEEGSGDEDSEGLGLEEYDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SASLLDTDKRYCGKTTSRKAWNEDHWEQTLPGSSDEEISDEEGSGDEDSEGLGLEEYDED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DLGAAEEQECGDHRESKKSRSHSAKTPGFSVQSISDFEKFTKGMDDLGSSEEEEDEESGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DLGAAEEQECGDHRESKKSRSHSAKTPGFSVQSISDFEKFTKGMDDLGSSEEEEDEESGM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EEGDDAEDSQGESEEDRAGDRNSEDDGVVMTFSSVKVSEEVEKGRAVKNQIALWDQLLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EEGDDAEDSQGESEEDRAGDRNSEDDGVVMTFSSVKVSEEVEKGRAVKNQIALWDQLLEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RIKLQKALLTTNQLPQPDVFPLFKDKGGPEFSSALKNSHKALKALLRSLVGLQEELLFQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RIKLQKALLTTNQLPQPDVFPLFKDKGGPEFSSALKNSHKALKALLRSLVGLQEELLFQY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 PDTRYLVDGTKPNAGSEEISSEDDELVEEKKQQRRRVPAKRKLEMEDYPSFMAKRFADFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PDTRYLVDGTKPNAGSEEISSEDDELVEEKKQQRRRVPAKRKLEMEDYPSFMAKRFADFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VYRNRTLQKWHDKTKLASGKLGKGFGAFERSILTQIDHILMDKERLLRRTQTKRSVYRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VYRNRTLQKWHDKTKLASGKLGKGFGAFERSILTQIDHILMDKERLLRRTQTKRSVYRVL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 GKPEPAAQPVPESLPGEPEILPQAPANAHLKDLDEEIFDDDDFYHQLLRELIERKTSSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GKPEPAAQPVPESLPGEPEILPQAPANAHLKDLDEEIFDDDDFYHQLLRELIERKTSSLD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 PNDQVAMGRQWLAIQKLRSKIHKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTTMNDDAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PNDQVAMGRQWLAIQKLRSKIHKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTTMNDDAR
              490       500       510       520       530       540

              550       560
pF1KB9 TELYRSLFGQLHPPDEGHGD
       ::::::::::::::::::::
NP_036 TELYRSLFGQLHPPDEGHGD
              550       560

>>XP_011522913 (OMIM: 608463) PREDICTED: protein AATF is  (536 aa)
 initn: 3513 init1: 3419 opt: 3419  Z-score: 2756.5  bits: 519.8 E(85289): 8.4e-147
Smith-Waterman score: 3493; 95.7% identity (95.7% similar) in 560 aa overlap (1-560:1-536)

               10        20        30        40        50        60
pF1KB9 MAGPQPLALQLEQLLNPRPSEADPEADPEEATAARVIDRFDEGEDGEGDFLVVGSIRKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGPQPLALQLEQLLNPRPSEADPEADPEEATAARVIDRFDEGEDGEGDFLVVGSIRKLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SASLLDTDKRYCGKTTSRKAWNEDHWEQTLPGSSDEEISDEEGSGDEDSEGLGLEEYDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SASLLDTDKRYCGKTTSRKAWNEDHWEQTLPGSSDEEISDEEGSGDEDSEGLGLEEYDED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DLGAAEEQECGDHRESKKSRSHSAKTPGFSVQSISDFEKFTKGMDDLGSSEEEEDEESGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLGAAEEQECGDHRESKKSRSHSAKTPGFSVQSISDFEKFTKGMDDLGSSEEEEDEESGM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EEGDDAEDSQGESEEDRAGDRNSEDDGVVMTFSSVKVSEEVEKGRAVKNQIALWDQLLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEGDDAEDSQGESEEDRAGDRNSEDDGVVMTFSSVKVSEEVEKGRAVKNQIALWDQLLEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RIKLQKALLTTNQLPQPDVFPLFKDKGGPEFSSALKNSHKALKALLRSLVGLQEELLFQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIKLQKALLTTNQLPQPDVFPLFKDKGGPEFSSALKNSHKALKALLRSLVGLQEELLFQY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 PDTRYLVDGTKPNAGSEEISSEDDELVEEKKQQRRRVPAKRKLEMEDYPSFMAKRFADFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDTRYLVDGTKPNAGSEEISSEDDELVEEKKQQRRRVPAKRKLEMEDYPSFMAKRFADFT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VYRNRTLQKWHDKTKLASGKLGKGFGAFERSILTQIDHILMDKERLLRRTQTKRSVYRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYRNRTLQKWHDKTKLASGKLGKGFGAFERSILTQIDHILMDKERLLRRTQTKRSVYRVL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 GKPEPAAQPVPESLPGEPEILPQAPANAHLKDLDEEIFDDDDFYHQLLRELIERKTSSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GKPEPAAQPVPESLPGEPEILPQAPANAHLKDLDEEIFDDDDFYHQLLRELIERKTSSLD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 PNDQVAMGRQWLAIQKLRSKIHKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTTMNDDAR
       ::::::::::::::::::::::::::::::::::::                        
XP_011 PNDQVAMGRQWLAIQKLRSKIHKKVDRKASKGRKLR------------------------
              490       500       510                              

              550       560
pF1KB9 TELYRSLFGQLHPPDEGHGD
       ::::::::::::::::::::
XP_011 TELYRSLFGQLHPPDEGHGD
        520       530      




560 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:20:13 2016 done: Thu Nov  3 23:20:14 2016
 Total Scan time: 10.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]