Result of FASTA (ccds) for
pF1KB9430
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9430, 433 aa
1>>>pF1KB9430 433 - 433 aa - 433 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3697+/-0.00107; mu= 2.8473+/- 0.066
mean_var=359.1846+/-74.642, 0's: 0 Z-trim(115.0): 56 B-trim: 0 in 0/52
Lambda= 0.067673
statistics sampled from 15491 (15539) to 15491 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.477), width: 16
Scan time: 3.950
The best scores are: opt bits E(32554)
CCDS4547.1 SOX4 gene_id:6659|Hs108|chr6 ( 474) 2096 218.3 1.3e-56
CCDS1654.1 SOX11 gene_id:6664|Hs108|chr2 ( 441) 781 89.8 5.6e-18
CCDS12995.1 SOX12 gene_id:6666|Hs108|chr20 ( 315) 647 76.6 3.9e-14
>>CCDS4547.1 SOX4 gene_id:6659|Hs108|chr6 (474 aa)
initn: 2197 init1: 2058 opt: 2096 Z-score: 1129.7 bits: 218.3 E(32554): 1.3e-56
Smith-Waterman score: 2699; 91.2% identity (91.2% similar) in 465 aa overlap (1-424:1-465)
10 20 30 40 50 60
pF1KB9 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 QAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYLFG
250 260 270 280 290 300
310
pF1KB9 GLGTSSSP-----------------------------------------AAGRSPADHRG
:::::::: :::::::::::
CCDS45 GLGTSSSPVGGVGAGADPSDPLGLYEEEGAGCSPDAPSLSGRSSAASSPAAGRSPADHRG
310 320 330 340 350 360
320 330 340 350 360 370
pF1KB9 YASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLNPSSNFESMSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLNPSSNFESMSLG
370 380 390 400 410 420
380 390 400 410 420 430
pF1KB9 SFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSEMISGDWLESSISNLVFTY
:::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSEMISGDWLESSISNLVFTY
430 440 450 460 470
>>CCDS1654.1 SOX11 gene_id:6664|Hs108|chr2 (441 aa)
initn: 1098 init1: 628 opt: 781 Z-score: 436.3 bits: 89.8 E(32554): 5.6e-18
Smith-Waterman score: 1018; 44.3% identity (66.6% similar) in 461 aa overlap (1-433:1-441)
10 20 30 40 50 60
pF1KB9 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
::::... : .:. : :. :. : :. .: ::. . . ::.:::: :::::
CCDS16 MVQQAESLE-AESNLPREALDTEEG-EF-MACSPVALDES-------DPDWCKTASGHIK
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
::::::::::.:::::::::::::::::::::::::::.::::.::::::::::::::::
CCDS16 RPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 ADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGG
::::::::::::: : . :.. .::..: ::. ..:.:::. :::.::.... :..
CCDS16 ADYPDYKYRPRKKPK---MDPSAKPSASQSP-EKS--AAGGGGGSAGGGAGGAKTSKGSS
120 130 140 150 160
190 200 210 220 230
pF1KB9 ---GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASF
: . ..:..: . :. : :::: .. .::::.::.. . .
CCDS16 KKCGKLKAPAAAGAKAGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDE
170 180 190 200 210 220
240 250 260 270 280
pF1KB9 AAEQAGAAALLPLGAAAD---------HHSLYK--ARTPSASASASSAASASAALAAPGK
.. : : . :..: . .. :: ..:.. :. :
CCDS16 DDDDDDDDDELQLQIKQEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVPAS---PTL
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB9 HLAEKKVKRVYLFGGLGTSSSPAAGRSPADHRGYASLRAASPAPSSAP--SHASSSASSH
. .. . . :. . .... .:: . . .. .. : : . : : ::: . :
CCDS16 SSSAESPEGASLYDEVRAGATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASSRSVST
290 300 310 320 330 340
350 360 370 380 390
pF1KB9 SSSSSSSGSSSSDDEFEDDL---LDLNPSSNFESMS---LGSFSSSSAL-----DRDLDF
::::::..::.:. : ::: :.:: :.. .: : ::. .... : :.:::
CCDS16 SSSSSSGSSSGSSGEDADDLMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLD-
350 360 370 380 390 400
400 410 420 430
pF1KB9 NFEPGS-GSHFEFPDYCTPEVSEMISGDWLESSISNLVFTY
.: :: :::::::::::::.::::.:::::...:.:::::
CCDS16 SFSEGSLGSHFEFPDYCTPELSEMIAGDWLEANFSDLVFTY
410 420 430 440
>>CCDS12995.1 SOX12 gene_id:6666|Hs108|chr20 (315 aa)
initn: 862 init1: 580 opt: 647 Z-score: 367.2 bits: 76.6 E(32554): 3.9e-14
Smith-Waterman score: 740; 40.6% identity (55.1% similar) in 401 aa overlap (34-433:16-315)
10 20 30 40 50 60
pF1KB9 QTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPM
: :: . : : .:.:::::::::::::
CCDS12 MVQQRGARAKRDGGPPPPGPGPAEEG-AREPGWCKTPSGHIKRPM
10 20 30 40
70 80 90 100 110 120
pF1KB9 NAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADY
:::::::: ::::::.: :::::::::::::.::.::.::.::::.::::::::::::::
CCDS12 NAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADY
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 PDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGGGGG
:::::::::: :..: :...: :
CCDS12 PDYKYRPRKK--------SKGAPAKARPRPPG----------------------------
110 120
190 200 210 220 230 240
pF1KB9 ASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAEQAG
.::::. :: : .. : :: . ::: :: ::: .
CCDS12 GSGGGSRLKP------GPQLPG-RGGRRA--------AGGPLGGGAAAPEDDD-------
130 140 150 160
250 260 270 280 290 300
pF1KB9 AAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYLFGGLG
: . : ..: . .::..: . .. .: .
CCDS12 ---------EDDDEELLEVRL----------------VETPGRELWR------MVPAGRA
170 180 190
310 320 330 340 350 360
pF1KB9 TSSSPAAGRSPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDD
. .. ...:. . : :. ::::.:: . .. . . .: .:
CCDS12 ARGQAERAQGPSGE-GAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGF
200 210 220 230 240 250
370 380 390 400 410 420
pF1KB9 LLDLNPSSNFESMSLGSFSSSSALDRDLDFNFEPGSG-SHFEFPDYCTPEVSEMISGDWL
: : :. .: . :::::: :. .: :: :::::::::::::.:::.:::
CCDS12 LSRLPPGPA----GL----DCSALDRDPDL--QPPSGTSHFEFPDYCTPEVTEMIAGDWR
260 270 280 290 300
430
pF1KB9 ESSISNLVFTY
:::..:::::
CCDS12 PSSIADLVFTY
310
433 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:20:50 2016 done: Thu Nov 3 23:20:51 2016
Total Scan time: 3.950 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]