Result of FASTA (omim) for
pF1KB9430
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9430, 433 aa
1>>>pF1KB9430 433 - 433 aa - 433 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3570+/-0.000413; mu= 2.6945+/- 0.026
mean_var=371.8891+/-76.732, 0's: 0 Z-trim(123.0): 94 B-trim: 77 in 1/57
Lambda= 0.066507
statistics sampled from 41867 (41969) to 41867 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.492), width: 16
Scan time: 11.770
The best scores are: opt bits E(85289)
NP_003098 (OMIM: 184430) transcription factor SOX- ( 474) 2096 214.8 3.8e-55
NP_003099 (OMIM: 600898,615866) transcription fact ( 441) 781 88.6 3.4e-17
NP_008874 (OMIM: 601947) transcription factor SOX- ( 315) 647 75.6 2.1e-13
NP_005977 (OMIM: 602148) transcription factor SOX- ( 391) 460 57.7 6e-08
NP_009015 (OMIM: 604974) transcription factor SOX- ( 276) 456 57.2 6.3e-08
NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 426 54.2 4.2e-07
NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 430 54.9 4.8e-07
NP_005625 (OMIM: 300123,312000,313430) transcripti ( 446) 420 54.0 9.3e-07
NP_008872 (OMIM: 602229,609136,611584,613266) tran ( 466) 411 53.1 1.7e-06
NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 402 52.1 2.5e-06
NP_004180 (OMIM: 604747) transcription factor SOX- ( 240) 394 51.1 3.6e-06
NP_000337 (OMIM: 114290,608160,616425) transcripti ( 509) 399 52.0 4.1e-06
NP_071899 (OMIM: 610928,613674) transcription fact ( 414) 376 49.7 1.7e-05
NP_060889 (OMIM: 137940,601618,607823) transcripti ( 384) 369 49.0 2.5e-05
NP_113627 (OMIM: 612202) transcription factor SOX- ( 388) 369 49.0 2.5e-05
NP_821078 (OMIM: 604975,616803) transcription fact ( 377) 343 46.5 0.00014
XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415) 343 46.6 0.00015
NP_001248343 (OMIM: 604975,616803) transcription f ( 642) 343 46.8 0.0002
XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715) 343 46.8 0.00021
XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715) 343 46.8 0.00021
XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715) 343 46.8 0.00021
XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715) 343 46.8 0.00021
XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716) 343 46.8 0.00021
NP_001317714 (OMIM: 604975,616803) transcription f ( 728) 343 46.9 0.00021
XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729) 343 46.9 0.00021
XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750) 343 46.9 0.00021
NP_694534 (OMIM: 604975,616803) transcription fact ( 750) 343 46.9 0.00021
XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 46.9 0.00022
XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 46.9 0.00022
XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 46.9 0.00022
XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 46.9 0.00022
XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 46.9 0.00022
XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 46.9 0.00022
XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 46.9 0.00022
XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 46.9 0.00022
XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 46.9 0.00022
NP_001248344 (OMIM: 604975,616803) transcription f ( 753) 343 46.9 0.00022
XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754) 343 46.9 0.00022
NP_008871 (OMIM: 604975,616803) transcription fact ( 763) 343 46.9 0.00022
XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764) 343 46.9 0.00022
XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792) 343 46.9 0.00022
XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793) 343 46.9 0.00022
NP_201583 (OMIM: 607257) transcription factor SOX- ( 808) 343 46.9 0.00023
XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621) 340 46.5 0.00023
NP_005677 (OMIM: 604748) transcription factor SOX- ( 622) 340 46.5 0.00023
NP_001139283 (OMIM: 607257) transcription factor S ( 801) 339 46.5 0.00029
NP_059978 (OMIM: 607257) transcription factor SOX- ( 804) 339 46.5 0.00029
NP_001139291 (OMIM: 607257) transcription factor S ( 841) 339 46.6 0.0003
NP_003131 (OMIM: 400044,400045,480000) sex-determi ( 204) 321 44.1 0.00041
>>NP_003098 (OMIM: 184430) transcription factor SOX-4 [H (474 aa)
initn: 2197 init1: 2058 opt: 2096 Z-score: 1111.1 bits: 214.8 E(85289): 3.8e-55
Smith-Waterman score: 2699; 91.2% identity (91.2% similar) in 465 aa overlap (1-424:1-465)
10 20 30 40 50 60
pF1KB9 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 QAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYLFG
250 260 270 280 290 300
310
pF1KB9 GLGTSSSP-----------------------------------------AAGRSPADHRG
:::::::: :::::::::::
NP_003 GLGTSSSPVGGVGAGADPSDPLGLYEEEGAGCSPDAPSLSGRSSAASSPAAGRSPADHRG
310 320 330 340 350 360
320 330 340 350 360 370
pF1KB9 YASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLNPSSNFESMSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLNPSSNFESMSLG
370 380 390 400 410 420
380 390 400 410 420 430
pF1KB9 SFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSEMISGDWLESSISNLVFTY
:::::::::::::::::::::::::::::::::::::::::::::
NP_003 SFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSEMISGDWLESSISNLVFTY
430 440 450 460 470
>>NP_003099 (OMIM: 600898,615866) transcription factor S (441 aa)
initn: 1098 init1: 628 opt: 781 Z-score: 429.6 bits: 88.6 E(85289): 3.4e-17
Smith-Waterman score: 1018; 44.3% identity (66.6% similar) in 461 aa overlap (1-433:1-441)
10 20 30 40 50 60
pF1KB9 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
::::... : .:. : :. :. : :. .: ::. . . ::.:::: :::::
NP_003 MVQQAESLE-AESNLPREALDTEEG-EF-MACSPVALDES-------DPDWCKTASGHIK
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
::::::::::.:::::::::::::::::::::::::::.::::.::::::::::::::::
NP_003 RPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 ADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGG
::::::::::::: : . :.. .::..: ::. ..:.:::. :::.::.... :..
NP_003 ADYPDYKYRPRKKPK---MDPSAKPSASQSP-EKS--AAGGGGGSAGGGAGGAKTSKGSS
120 130 140 150 160
190 200 210 220 230
pF1KB9 ---GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASF
: . ..:..: . :. : :::: .. .::::.::.. . .
NP_003 KKCGKLKAPAAAGAKAGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDE
170 180 190 200 210 220
240 250 260 270 280
pF1KB9 AAEQAGAAALLPLGAAAD---------HHSLYK--ARTPSASASASSAASASAALAAPGK
.. : : . :..: . .. :: ..:.. :. :
NP_003 DDDDDDDDDELQLQIKQEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVPAS---PTL
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB9 HLAEKKVKRVYLFGGLGTSSSPAAGRSPADHRGYASLRAASPAPSSAP--SHASSSASSH
. .. . . :. . .... .:: . . .. .. : : . : : ::: . :
NP_003 SSSAESPEGASLYDEVRAGATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASSRSVST
290 300 310 320 330 340
350 360 370 380 390
pF1KB9 SSSSSSSGSSSSDDEFEDDL---LDLNPSSNFESMS---LGSFSSSSAL-----DRDLDF
::::::..::.:. : ::: :.:: :.. .: : ::. .... : :.:::
NP_003 SSSSSSGSSSGSSGEDADDLMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLD-
350 360 370 380 390 400
400 410 420 430
pF1KB9 NFEPGS-GSHFEFPDYCTPEVSEMISGDWLESSISNLVFTY
.: :: :::::::::::::.::::.:::::...:.:::::
NP_003 SFSEGSLGSHFEFPDYCTPELSEMIAGDWLEANFSDLVFTY
410 420 430 440
>>NP_008874 (OMIM: 601947) transcription factor SOX-12 [ (315 aa)
initn: 862 init1: 580 opt: 647 Z-score: 361.7 bits: 75.6 E(85289): 2.1e-13
Smith-Waterman score: 740; 40.6% identity (55.1% similar) in 401 aa overlap (34-433:16-315)
10 20 30 40 50 60
pF1KB9 QTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPM
: :: . : : .:.:::::::::::::
NP_008 MVQQRGARAKRDGGPPPPGPGPAEEG-AREPGWCKTPSGHIKRPM
10 20 30 40
70 80 90 100 110 120
pF1KB9 NAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADY
:::::::: ::::::.: :::::::::::::.::.::.::.::::.::::::::::::::
NP_008 NAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADY
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 PDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGGGGG
:::::::::: :..: :...: :
NP_008 PDYKYRPRKK--------SKGAPAKARPRPPG----------------------------
110 120
190 200 210 220 230 240
pF1KB9 ASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAEQAG
.::::. :: : .. : :: . ::: :: ::: .
NP_008 GSGGGSRLKP------GPQLPG-RGGRRA--------AGGPLGGGAAAPEDDD-------
130 140 150 160
250 260 270 280 290 300
pF1KB9 AAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYLFGGLG
: . : ..: . .::..: . .. .: .
NP_008 ---------EDDDEELLEVRL----------------VETPGRELWR------MVPAGRA
170 180 190
310 320 330 340 350 360
pF1KB9 TSSSPAAGRSPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDD
. .. ...:. . : :. ::::.:: . .. . . .: .:
NP_008 ARGQAERAQGPSGE-GAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGF
200 210 220 230 240 250
370 380 390 400 410 420
pF1KB9 LLDLNPSSNFESMSLGSFSSSSALDRDLDFNFEPGSG-SHFEFPDYCTPEVSEMISGDWL
: : :. .: . :::::: :. .: :: :::::::::::::.:::.:::
NP_008 LSRLPPGPA----GL----DCSALDRDPDL--QPPSGTSHFEFPDYCTPEVTEMIAGDWR
260 270 280 290 300
430
pF1KB9 ESSISNLVFTY
:::..:::::
NP_008 PSSIADLVFTY
310
>>NP_005977 (OMIM: 602148) transcription factor SOX-1 [H (391 aa)
initn: 413 init1: 413 opt: 460 Z-score: 263.7 bits: 57.7 E(85289): 6e-08
Smith-Waterman score: 509; 34.8% identity (58.7% similar) in 339 aa overlap (20-353:12-310)
10 20 30 40 50 60
pF1KB9 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
: .:: .... :. .. :: . . :. . ..:
NP_005 MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGAKANQDRVK
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
::::::::::. .:::. ...: :::.::::::: .::......: ::: ::.::: ::
NP_005 RPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 ADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGG
..::::::::.:.:. : :: . .:: .:.::::.. : :
NP_005 KEHPDYKYRPRRKTKTL---------------LKKDKYSLAGGLLAAGAGGGGAAVAMGV
120 130 140 150
190 200 210 220 230 240
pF1KB9 GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAE
: :. :: . . .: : :.:::: . :.. :. :. :::::::.. :
NP_005 GVGV---GAAAVGQRLESPG----GAAGGGYA--HVNGWANGAYPGSVAAAAAAAAMMQE
160 170 180 190 200
250 260 270 280 290 300
pF1KB9 QAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYLFG
: : : .: :.:... : : : : . . . : .:
NP_005 -----AQLAYG----QH-------PGAGGAHPHAHPAHPHPHHPHAHPHNPQPMHRYDMG
210 220 230 240 250
310 320 330 340 350
pF1KB9 GLGTSS-SPAAGRSPADHRGYASL---RAASPAPSSAPSHASSS-ASSHSSSSSSSGSSS
.: : : . : :. ::..: ::. : ... .: .:. :.. .....:::.
NP_005 ALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAAAGGAHQNSAVAAAAAAAAASSGALG
260 270 280 290 300 310
360 370 380 390 400 410
pF1KB9 SDDEFEDDLLDLNPSSNFESMSLGSFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSE
NP_005 ALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAAAAAAAAQSRLHSLP
320 330 340 350 360 370
>>NP_009015 (OMIM: 604974) transcription factor SOX-21 [ (276 aa)
initn: 505 init1: 393 opt: 456 Z-score: 263.3 bits: 57.2 E(85289): 6.3e-08
Smith-Waterman score: 464; 40.2% identity (65.2% similar) in 244 aa overlap (55-287:4-222)
30 40 50 60 70 80
pF1KB9 GLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDM
: :.:::::::::::. .:::. ...: :
NP_009 MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKM
10 20 30
90 100 110 120 130 140
pF1KB9 HNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADYPDYKYRPRKKVKSGNANSSSS
::.::::::: .:::: .:.: ::: ::.::: :: ..::::::::.: :. ... .
NP_009 HNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFA
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB9 AAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGGGGGASGGGANSKPAQKKSCGSKVA
: : .:: . . : . .:.. .::.::: . : . . :.:
NP_009 F-----PVPYG--LGGVADAEHPALKAGAGLHAGAGGGLV--------PESLLANPEKAA
100 110 120 130
210 220 230 240 250
pF1KB9 GGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAEQAGAA-ALLPLGA-----AADHHS
..:.... :.... ..::::::. :: ::. .:: ::. ... .
NP_009 AAAAAAA----ARVFFP------QSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSG
140 150 160 170 180
260 270 280 290 300 310
pF1KB9 LYKART---PSASASA--SSAASASAALAAPGKHLAEKKVKRVYLFGGLGTSSSPAAGRS
: : . :.:.:.: ..::.:.:: :: : :
NP_009 LPYASSLGYPTAGAGAFHGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGL
190 200 210 220 230 240
320 330 340 350 360 370
pF1KB9 PADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLNPSSNF
NP_009 QPPLAYILLPGMGKPQLDPYPAAYAAAL
250 260 270
>>NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapiens] (233 aa)
initn: 446 init1: 396 opt: 426 Z-score: 248.6 bits: 54.2 E(85289): 4.2e-07
Smith-Waterman score: 433; 43.4% identity (69.9% similar) in 173 aa overlap (15-182:3-162)
10 20 30 40 50
pF1KB9 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGK----ADDPSWCKT-P
: : :.:.. .:: : : ....:.: . : .:. : :
NP_008 MALPGSSQDQAWSLEPPAA---TAAASSSSGPQEREGAGSPAAPGTLP
10 20 30 40
60 70 80 90 100 110
pF1KB9 SGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERL
..:::::::::::. .::.. .:.: :::.::::::: .:::: ...: ::..::.::
NP_008 LEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB9 RLKHMADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSS
: .:. ::::::::::.:.::..:. :.. :. :. ..:: : : ...
NP_008 RARHLRDYPDYKYRPRRKAKSSGAG----------PSRCGQGRGNLASGGPLWGPGYATT
110 120 130 140 150
180 190 200 210 220 230
pF1KB9 NAGGGGGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAA
. . : :
NP_008 QPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGS
160 170 180 190 200 210
>>NP_055402 (OMIM: 605923) transcription factor SOX-8 [H (446 aa)
initn: 452 init1: 403 opt: 430 Z-score: 247.5 bits: 54.9 E(85289): 4.8e-07
Smith-Waterman score: 430; 31.6% identity (57.3% similar) in 307 aa overlap (58-353:101-394)
30 40 50 60 70 80
pF1KB9 LGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNA
:.::::::::::.: :::. .: : .:::
NP_055 AVSQVLKGYDWSLVPMPVRGGGGGALKAKPHVKRPMNAFMVWAQAARRKLADQYPHLHNA
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB9 EISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADYPDYKYRPRKK--VKSGNANSSSSA
:.:: ::: :.::..:.: ::..::::::..: :.:::::.::.. .:.:...:.:.:
NP_055 ELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSAKAGHSDSDSGA
140 150 160 170 180 190
150 160 170 180 190
pF1KB9 AASSKPGEKGDKV----GGSGGGGHGGGGGGGSSNAGGGGGGASG--GGANSKPAQKKSC
. .:: : : .: : : : : : . . . :..:: . :
NP_055 ELGPHPG--GGAVYKAEAGLGDGHHHGDHTGQTHGPPTPPTTPKTELQQAGAKP-ELKLE
200 210 220 230 240
200 210 220 230 240 250
pF1KB9 GSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAA--EQAGAAALLPLGAAADHH
: . . .. ... .. . .. : : . : .: : : : :
NP_055 GRRPVDSGRQNIDFSNVDISELSSEVMGTMDAFDVHEFDQYLPLGGPAPPEP-GQAYGGA
250 260 270 280 290 300
260 270 280 290 300 310
pF1KB9 SLYKARTPS-ASASASSAASASAALAAPGKHLAEKKVKRVYLFGGLGTSSSPAAGRSPAD
.. . .: : :: ::... . . : :. .. . : : ..: :. :
NP_055 YFHAGASPVWAHKSAPSASASPTETGPPRPHIKTEQPSP----GHYG--DQP---RGSPD
310 320 330 340 350
320 330 340 350 360 370
pF1KB9 HRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLNPSSNFESM
. . .. .:.:: ..: .:.. . ..:: :.
NP_055 YGSCSGQSSATPAAPAGPFAGSQGDYGDLQASSYYGAYPGYAPGLYQYPCFHSPRRPYAS
360 370 380 390 400 410
380 390 400 410 420 430
pF1KB9 SLGSFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSEMISGDWLESSISNLVFTY
NP_055 PLLNGLALPPAHSPTSHWDQPVYTTLTRP
420 430 440
>>NP_005625 (OMIM: 300123,312000,313430) transcription f (446 aa)
initn: 379 init1: 379 opt: 420 Z-score: 242.3 bits: 54.0 E(85289): 9.3e-07
Smith-Waterman score: 446; 34.0% identity (57.0% similar) in 356 aa overlap (16-334:106-442)
10 20 30 40
pF1KB9 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGK
::.:: ..:: : :. .. :: ::
NP_005 MYSLLETELKNPVGTPTQAAGTGGPAAPGGAGKSSANAAG---GANSGGGSSGGASGGGG
80 90 100 110 120 130
50 60 70 80 90 100
pF1KB9 ADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDK
. : . ..:::::::::::. .:::. ..: :::.::::::: :::: :..:
NP_005 GTDQD-------RVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEK
140 150 160 170 180
110 120 130 140
pF1KB9 IPFIREAERLRLKHMADYPDYKYRPRKKVK-----------SG---------NANSSSSA
::: ::.::: :: .:::::::::.:.: :: : ....:
NP_005 RPFIDEAKRLRAVHMKEYPDYKYRPRRKTKTLLKKDKYSLPSGLLPPGAAAAAAAAAAAA
190 200 210 220 230 240
150 160 170 180 190 200
pF1KB9 AASSKPGEKGDKVGG-SGGGGHGGGGGGGSSNAGGGGGGASGGGANSKPAQKKSCGSKVA
::.:.: :... . .: ..:. . .. : . : .. :: .:
NP_005 AAASSPVGVGQRLDTYTHVNGWANGAYSLVQEQLGYAQPPSMSSPPPPPALPPMHRYDMA
250 260 270 280 290 300
210 220 230 240 250
pF1KB9 GGAGGGVSKPHAKLIL-------AGGGGGG---KAAAAAAASFAAEQAGAAALLPLGAAA
: . . : :. . :..: :: .:.:::::... . : ::: .:::
NP_005 GLQYSPMMPPGAQSYMNVAAAAAAASGYGGMAPSATAAAAAAYGQQPATAAA---AAAAA
310 320 330 340 350 360
260 270 280 290 300
pF1KB9 DHHSLYKARTPSASASASSAASASAALAAPGKH--LAE-KKVKRVYLF--GGLGTSSSP-
:: : .:. : .: :.:. ... :.. . . .:: : . ..::
NP_005 AAMSL----GPMGSVVKSEPSSPPPAIASHSQRACLGDLRDMISMYLPPGGDAADAASPL
370 380 390 400 410
310 320 330 340 350 360
pF1KB9 AAGRSPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLN
.:: . :. : . :.. . ...:
NP_005 PGGRLHGVHQHYQG--AGTAVNGTVPLTHI
420 430 440
>>NP_008872 (OMIM: 602229,609136,611584,613266) transcri (466 aa)
initn: 369 init1: 369 opt: 411 Z-score: 237.4 bits: 53.1 E(85289): 1.7e-06
Smith-Waterman score: 429; 29.1% identity (53.5% similar) in 368 aa overlap (58-410:103-462)
30 40 50 60 70 80
pF1KB9 LGIASSPTPGSTASTGGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNA
:.::::::::::.: :::. .: : .:::
NP_008 REAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNA
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB9 EISKRLGKRWKLLKDSDKIPFIREAERLRLKHMADYPDYKYRPRKKVKSGNANSSSSAAA
:.:: ::: :.::..::: :::.::::::..: :.:::::.::.. :.:.: .. .
NP_008 ELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRR-KNGKAAQGEAEC-
140 150 160 170 180 190
150 160 170 180 190
pF1KB9 SSKPGEKGDKVGGSGGGGHGGGG-------GGGSSNAGGGGGGASGG--GANSKPAQKKS
:: .... : .. .: .. : :: . :. :: : . :. :.
NP_008 ---PGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKT
200 210 220 230 240
200 210 220 230 240 250
pF1KB9 ---CGS---KVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFAAEQAGAAALLPLGA
:. : : . : .::: . . : .. . . .: . : :: ..
NP_008 ELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETF--DVAELDQYLPPNG
250 260 270 280 290 300
260 270 280 290 300 310
pF1KB9 AADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYLFGGLGTSSSPAAGR
: : :.: . ... . :.. :: .. : .: :. . . ... :. .
NP_008 HPGHVSSYSAAGYGLGSALAVASGHSAWISKP-PGVALPTVSPPGVDAKAQVKTETAGPQ
310 320 330 340 350 360
320 330 340 350 360 370
pF1KB9 SPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLNPSSN
.: . : . . : : ..:. : . . : . : . . . :
NP_008 GPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASGLYSA
370 380 390 400 410 420
380 390 400 410 420 430
pF1KB9 FESMSLGSFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSEMISGDWLESSISNLVFT
: :. .. .:.. . . : .:.: : : :
NP_008 FSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP
430 440 450 460
pF1KB9 Y
>>NP_003097 (OMIM: 184429,189960,206900) transcription f (317 aa)
initn: 369 init1: 369 opt: 402 Z-score: 234.6 bits: 52.1 E(85289): 2.5e-06
Smith-Waterman score: 428; 32.2% identity (56.5% similar) in 329 aa overlap (34-354:12-307)
10 20 30 40 50
pF1KB9 QTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWC----KTPSGHI
: : .:.. :: . . :. ..
NP_003 MYNMMETELKPPGPQQTSGGGGGNSTAAAAGGNQKNSPDRV
10 20 30 40
60 70 80 90 100 110
pF1KB9 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKH
:::::::::::. .:::. ...: :::.::::::: .::::....: ::: ::.::: :
NP_003 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB9 MADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGG
: ..::::::::.:.:. : :: :: . ::.: :.:
NP_003 MKEHPDYKYRPRRKTKTL---------------MKKDKYTLPGG----LLAPGGNSMASG
110 120 130 140
180 190 200 210 220 230
pF1KB9 GGGGAS-GGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASFA
: ::. :.:.: :. . ... : ..:. : . .: : : .::..
NP_003 VGVGAGLGAGVN----QRMDSYAHMNGWSNGSYSMMQDQLGYPQHPG---LNAHGAAQMQ
150 160 170 180 190
240 250 260 270 280 290
pF1KB9 AEQAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVYL
. .. : .. .. .. : .:. : : :. .. . ::.. :. . . . .
NP_003 PMHRYDVSALQYNSMTSSQT-YMNGSPTYSMSYSQQGTPGMALGSMGSVVKSEASSSPPV
200 210 220 230 240 250
300 310 320 330 340 350
pF1KB9 FGGLGTSSSPAAGRSPADHRGYASLR---AASPAPSSAPSHASSSASSHSSSSSSSGSSS
. .:: : . .: : . :. : : :. :::. :.: .:. :..
NP_003 ---VTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPA-APSRL--HMSQHYQSGPVPGTAI
260 270 280 290 300
360 370 380 390 400 410
pF1KB9 SDDEFEDDLLDLNPSSNFESMSLGSFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSE
NP_003 NGTLPLSHM
310
433 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:20:51 2016 done: Thu Nov 3 23:20:53 2016
Total Scan time: 11.770 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]