FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9436, 146 aa
  1>>>pF1KB9436 146 - 146 aa - 146 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9176+/-0.000302; mu= -11.0409+/- 0.019
 mean_var=336.0831+/-68.026, 0's: 0 Z-trim(127.8): 1  B-trim: 488 in 1/61
 Lambda= 0.069960
 statistics sampled from 57384 (57385) to 57384 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.898), E-opt: 0.2 (0.673), width:  16
 Scan time:  6.470

The best scores are:                                      opt bits E(85289)
NP_060489 (OMIM: 609878) mediator of RNA polymeras ( 146) 1005 112.8   2e-25


>>NP_060489 (OMIM: 609878) mediator of RNA polymerase II  (146 aa)
 initn: 1005 init1: 1005 opt: 1005  Z-score: 577.6  bits: 112.8 E(85289): 2e-25
Smith-Waterman score: 1005; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KB9 MASAGVAAGRQAEDVLPPTSDQPLPDTKPLPPPQPPPVPAPQPQQSPAPRPQSPARAREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MASAGVAAGRQAEDVLPPTSDQPLPDTKPLPPPQPPPVPAPQPQQSPAPRPQSPARAREE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ENYSFLPLVHNIIKCMDKDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ENYSFLPLVHNIIKCMDKDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQS
               70        80        90       100       110       120

              130       140      
pF1KB9 LREQVRTKNELLQKYKSLCMFEIPKE
       ::::::::::::::::::::::::::
NP_060 LREQVRTKNELLQKYKSLCMFEIPKE
              130       140      




146 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:03:00 2016 done: Fri Nov  4 17:03:01 2016
 Total Scan time:  6.470 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]