Result of FASTA (ccds) for
pF1KB9448
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9448, 487 aa
1>>>pF1KB9448 487 - 487 aa - 487 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5677+/-0.00095; mu= 12.3649+/- 0.057
mean_var=92.3129+/-18.137, 0's: 0 Z-trim(107.6): 29 B-trim: 440 in 1/51
Lambda= 0.133488
statistics sampled from 9639 (9652) to 9639 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.296), width: 16
Scan time: 3.440
The best scores are: opt bits E(32554)
CCDS2307.1 NAB1 gene_id:4664|Hs108|chr2 ( 487) 3199 626.3 2.2e-179
CCDS82545.1 NAB1 gene_id:4664|Hs108|chr2 ( 486) 3180 622.6 2.8e-178
CCDS81701.1 NAB2 gene_id:4665|Hs108|chr12 ( 461) 617 129.0 1e-29
CCDS8930.1 NAB2 gene_id:4665|Hs108|chr12 ( 525) 617 129.1 1.2e-29
>>CCDS2307.1 NAB1 gene_id:4664|Hs108|chr2 (487 aa)
initn: 3199 init1: 3199 opt: 3199 Z-score: 3333.8 bits: 626.3 E(32554): 2.2e-179
Smith-Waterman score: 3199; 100.0% identity (100.0% similar) in 487 aa overlap (1-487:1-487)
10 20 30 40 50 60
pF1KB9 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 ALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK
430 440 450 460 470 480
pF1KB9 TEPEDSR
:::::::
CCDS23 TEPEDSR
>>CCDS82545.1 NAB1 gene_id:4664|Hs108|chr2 (486 aa)
initn: 2382 init1: 2382 opt: 3180 Z-score: 3314.1 bits: 622.6 E(32554): 2.8e-178
Smith-Waterman score: 3180; 99.8% identity (99.8% similar) in 487 aa overlap (1-487:1-486)
10 20 30 40 50 60
pF1KB9 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 ALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALSSQ-PEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG
370 380 390 400 410
430 440 450 460 470 480
pF1KB9 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK
420 430 440 450 460 470
pF1KB9 TEPEDSR
:::::::
CCDS82 TEPEDSR
480
>>CCDS81701.1 NAB2 gene_id:4665|Hs108|chr12 (461 aa)
initn: 1089 init1: 576 opt: 617 Z-score: 646.9 bits: 129.0 E(32554): 1e-29
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (2-342:33-391)
10 20 30
pF1KB9 MAAALPRTLGELQLYRILQKANLLSYFDAFI
: :::::::::::::.::.::::::...::
CCDS81 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
CCDS81 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
70 80 90 100 110 120
100 110 120 130 140
pF1KB9 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
::::..:. : . : : ... :....:: : : ::. : .
CCDS81 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
130 140 150 160 170
150 160 170 180 190
pF1KB9 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
:. ..:. :.: :. . ::. . . . ::: :: :.. : ::. .
CCDS81 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
180 190 200 210 220 230
200 210 220 230 240
pF1KB9 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
:.: :::. ..:..: .:: ::: :::::. .::::::.:.: .:
CCDS81 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB9 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
:::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
CCDS81 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
300 310 320 330 340 350
310 320 330 340 350 360
pF1KB9 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
:: :: . . .. . : :..: : : :..:
CCDS81 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
360 370 380 390 400 410
370 380 390 400 410 420
pF1KB9 SSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGER
CCDS81 SASLSGESLDGHLQEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
420 430 440 450 460
>>CCDS8930.1 NAB2 gene_id:4665|Hs108|chr12 (525 aa)
initn: 1095 init1: 576 opt: 617 Z-score: 646.0 bits: 129.1 E(32554): 1.2e-29
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (2-342:33-391)
10 20 30
pF1KB9 MAAALPRTLGELQLYRILQKANLLSYFDAFI
: :::::::::::::.::.::::::...::
CCDS89 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
CCDS89 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
70 80 90 100 110 120
100 110 120 130 140
pF1KB9 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
::::..:. : . : : ... :....:: : : ::. : .
CCDS89 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
130 140 150 160 170
150 160 170 180 190
pF1KB9 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
:. ..:. :.: :. . ::. . . . ::: :: :.. : ::. .
CCDS89 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
180 190 200 210 220 230
200 210 220 230 240
pF1KB9 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
:.: :::. ..:..: .:: ::: :::::. .::::::.:.: .:
CCDS89 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB9 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
:::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
CCDS89 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
300 310 320 330 340 350
310 320 330 340 350 360
pF1KB9 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
:: :: . . .. . : :..: : : :..:
CCDS89 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
360 370 380 390 400 410
370 380 390 400 410 420
pF1KB9 SSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGER
CCDS89 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
420 430 440 450 460 470
487 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:26:17 2016 done: Thu Nov 3 23:26:17 2016
Total Scan time: 3.440 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]