Result of FASTA (ccds) for
pF1KB9479
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9479, 731 aa
1>>>pF1KB9479 731 - 731 aa - 731 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4239+/-0.000824; mu= 7.5123+/- 0.049
mean_var=205.4417+/-41.371, 0's: 0 Z-trim(114.8): 26 B-trim: 105 in 1/53
Lambda= 0.089481
statistics sampled from 15383 (15403) to 15383 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.473), width: 16
Scan time: 4.970
The best scores are: opt bits E(32554)
CCDS1074.1 PBXIP1 gene_id:57326|Hs108|chr1 ( 731) 5014 660.1 3.5e-189
CCDS81382.1 PBXIP1 gene_id:57326|Hs108|chr1 ( 702) 4816 634.5 1.7e-181
>>CCDS1074.1 PBXIP1 gene_id:57326|Hs108|chr1 (731 aa)
initn: 5014 init1: 5014 opt: 5014 Z-score: 3510.0 bits: 660.1 E(32554): 3.5e-189
Smith-Waterman score: 5014; 100.0% identity (100.0% similar) in 731 aa overlap (1-731:1-731)
10 20 30 40 50 60
pF1KB9 MASCPDSDNSWVLAGSESLPVETLGPASRMDPESERALQAPHSPSKTDGKELAGTMDGEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASCPDSDNSWVLAGSESLPVETLGPASRMDPESERALQAPHSPSKTDGKELAGTMDGEG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TLFQTESPQSGSILTEETEVKGTLEGDVCGVEPPGPGDTVVQGDLQETTVVTGLGPDTQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TLFQTESPQSGSILTEETEVKGTLEGDVCGVEPPGPGDTVVQGDLQETTVVTGLGPDTQD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LEGQSPPQSLPSTPKAAWIREEGRCSSSDDDTDVDMEGLRRRRGREAGPPQPMVPLAVEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LEGQSPPQSLPSTPKAAWIREEGRCSSSDDDTDVDMEGLRRRRGREAGPPQPMVPLAVEN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 QAGGEGAGGELGISLNMCLLGALVLLGLGVLLFSGGLSESETGPMEEVERQVLPDPEVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QAGGEGAGGELGISLNMCLLGALVLLGLGVLLFSGGLSESETGPMEEVERQVLPDPEVLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 AVGDRQDGLREQLQAPVPPDSVPSLQNMGLLLDKLAKENQDIRLLQAQLQAQKEELQSLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AVGDRQDGLREQLQAPVPPDSVPSLQNMGLLLDKLAKENQDIRLLQAQLQAQKEELQSLM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 HQPKGLEEENAQLRGALQQGEAFQRALESELQQLRARLQGLEADCVRGPDGVCLSGGRGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HQPKGLEEENAQLRGALQQGEAFQRALESELQQLRARLQGLEADCVRGPDGVCLSGGRGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QGDKAIREQGPREQEPELSFLKQKEQLEAEAQALRQELERQRRLLGSVQQDLERSLQDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QGDKAIREQGPREQEPELSFLKQKEQLEAEAQALRQELERQRRLLGSVQQDLERSLQDAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 RGDPAHAGLAELGHRLAQKLQGLENWGQDPGVSANASKAWHQKSHFQNSREWSGKEKWWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RGDPAHAGLAELGHRLAQKLQGLENWGQDPGVSANASKAWHQKSHFQNSREWSGKEKWWD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 GQRDRKAEHWKHKKEESGRERKKNWGGQEDREPAGRWKEGRPRVEESGSKKEGKRQGPKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQRDRKAEHWKHKKEESGRERKKNWGGQEDREPAGRWKEGRPRVEESGSKKEGKRQGPKE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 PPRKSGSFHSSGEKQKQPRWREGTKDSHDPLPSWAELLRPKYRAPQGCSGVDECARQEGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPRKSGSFHSSGEKQKQPRWREGTKDSHDPLPSWAELLRPKYRAPQGCSGVDECARQEGL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 TFFGTELAPVRQQELASLLRTYLARLPWAGQLTKELPLSPAFFGEDGIFRHDRLRFRDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TFFGTELAPVRQQELASLLRTYLARLPWAGQLTKELPLSPAFFGEDGIFRHDRLRFRDFV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 DALEDSLEEVAVQQTGDDDEVDDFEDFIFSHFFGDKALKKRSGKKDKHSQSPRAAGPREG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DALEDSLEEVAVQQTGDDDEVDDFEDFIFSHFFGDKALKKRSGKKDKHSQSPRAAGPREG
670 680 690 700 710 720
730
pF1KB9 HSHSHHHHHRG
:::::::::::
CCDS10 HSHSHHHHHRG
730
>>CCDS81382.1 PBXIP1 gene_id:57326|Hs108|chr1 (702 aa)
initn: 4816 init1: 4816 opt: 4816 Z-score: 3372.1 bits: 634.5 E(32554): 1.7e-181
Smith-Waterman score: 4816; 100.0% identity (100.0% similar) in 702 aa overlap (30-731:1-702)
10 20 30 40 50 60
pF1KB9 MASCPDSDNSWVLAGSESLPVETLGPASRMDPESERALQAPHSPSKTDGKELAGTMDGEG
:::::::::::::::::::::::::::::::
CCDS81 MDPESERALQAPHSPSKTDGKELAGTMDGEG
10 20 30
70 80 90 100 110 120
pF1KB9 TLFQTESPQSGSILTEETEVKGTLEGDVCGVEPPGPGDTVVQGDLQETTVVTGLGPDTQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TLFQTESPQSGSILTEETEVKGTLEGDVCGVEPPGPGDTVVQGDLQETTVVTGLGPDTQD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 LEGQSPPQSLPSTPKAAWIREEGRCSSSDDDTDVDMEGLRRRRGREAGPPQPMVPLAVEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LEGQSPPQSLPSTPKAAWIREEGRCSSSDDDTDVDMEGLRRRRGREAGPPQPMVPLAVEN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 QAGGEGAGGELGISLNMCLLGALVLLGLGVLLFSGGLSESETGPMEEVERQVLPDPEVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QAGGEGAGGELGISLNMCLLGALVLLGLGVLLFSGGLSESETGPMEEVERQVLPDPEVLE
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 AVGDRQDGLREQLQAPVPPDSVPSLQNMGLLLDKLAKENQDIRLLQAQLQAQKEELQSLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AVGDRQDGLREQLQAPVPPDSVPSLQNMGLLLDKLAKENQDIRLLQAQLQAQKEELQSLM
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 HQPKGLEEENAQLRGALQQGEAFQRALESELQQLRARLQGLEADCVRGPDGVCLSGGRGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HQPKGLEEENAQLRGALQQGEAFQRALESELQQLRARLQGLEADCVRGPDGVCLSGGRGP
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 QGDKAIREQGPREQEPELSFLKQKEQLEAEAQALRQELERQRRLLGSVQQDLERSLQDAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QGDKAIREQGPREQEPELSFLKQKEQLEAEAQALRQELERQRRLLGSVQQDLERSLQDAS
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB9 RGDPAHAGLAELGHRLAQKLQGLENWGQDPGVSANASKAWHQKSHFQNSREWSGKEKWWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RGDPAHAGLAELGHRLAQKLQGLENWGQDPGVSANASKAWHQKSHFQNSREWSGKEKWWD
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB9 GQRDRKAEHWKHKKEESGRERKKNWGGQEDREPAGRWKEGRPRVEESGSKKEGKRQGPKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GQRDRKAEHWKHKKEESGRERKKNWGGQEDREPAGRWKEGRPRVEESGSKKEGKRQGPKE
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB9 PPRKSGSFHSSGEKQKQPRWREGTKDSHDPLPSWAELLRPKYRAPQGCSGVDECARQEGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PPRKSGSFHSSGEKQKQPRWREGTKDSHDPLPSWAELLRPKYRAPQGCSGVDECARQEGL
520 530 540 550 560 570
610 620 630 640 650 660
pF1KB9 TFFGTELAPVRQQELASLLRTYLARLPWAGQLTKELPLSPAFFGEDGIFRHDRLRFRDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TFFGTELAPVRQQELASLLRTYLARLPWAGQLTKELPLSPAFFGEDGIFRHDRLRFRDFV
580 590 600 610 620 630
670 680 690 700 710 720
pF1KB9 DALEDSLEEVAVQQTGDDDEVDDFEDFIFSHFFGDKALKKRSGKKDKHSQSPRAAGPREG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DALEDSLEEVAVQQTGDDDEVDDFEDFIFSHFFGDKALKKRSGKKDKHSQSPRAAGPREG
640 650 660 670 680 690
730
pF1KB9 HSHSHHHHHRG
:::::::::::
CCDS81 HSHSHHHHHRG
700
731 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:47:40 2016 done: Thu Nov 3 23:47:41 2016
Total Scan time: 4.970 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]