FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9494, 840 aa
  1>>>pF1KB9494 840 - 840 aa - 840 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1832+/-0.000899; mu= 15.9435+/- 0.054
 mean_var=87.4508+/-18.679, 0's: 0 Z-trim(108.7): 126  B-trim: 373 in 1/49
 Lambda= 0.137149
 statistics sampled from 10206 (10358) to 10206 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.318), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(32554)
CCDS33606.1 LZTR1 gene_id:8216|Hs108|chr22         ( 840) 5733 1144.9       0


>>CCDS33606.1 LZTR1 gene_id:8216|Hs108|chr22              (840 aa)
 initn: 5733 init1: 5733 opt: 5733  Z-score: 6127.9  bits: 1144.9 E(32554):    0
Smith-Waterman score: 5733; 100.0% identity (100.0% similar) in 840 aa overlap (1-840:1-840)

               10        20        30        40        50        60
pF1KB9 MAGPGSTGGQIGAAALAGGARSKVAPSVDFDHSCSDSVEYLTLNFGPFETVHRWRRLPPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAGPGSTGGQIGAAALAGGARSKVAPSVDFDHSCSDSVEYLTLNFGPFETVHRWRRLPPC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DEFVGARRSKHTVVAYKDAIYVFGGDNGKTMLNDLLRFDVKDCSWCRAFTTGTPPAPRYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DEFVGARRSKHTVVAYKDAIYVFGGDNGKTMLNDLLRFDVKDCSWCRAFTTGTPPAPRYH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 HSAVVYGSSMFVFGGYTGDIYSNSNLKNKNDLFEYKFATGQWTEWKIEGRLPVARSAHGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HSAVVYGSSMFVFGGYTGDIYSNSNLKNKNDLFEYKFATGQWTEWKIEGRLPVARSAHGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 TVYSDKLWIFAGYDGNARLNDMWTIGLQDRELTCWEEVAQSGEIPPSCCNFPVAVCRDKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TVYSDKLWIFAGYDGNARLNDMWTIGLQDRELTCWEEVAQSGEIPPSCCNFPVAVCRDKM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 FVFSGQSGAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVAFDRHLYVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FVFSGQSGAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQRRYGHTMVAFDRHLYVFG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 GAADNTLPNELHCYDVDFQTWEVVQPSSDSEVGGAEVPERACASEEVPTLTYEERVGFKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GAADNTLPNELHCYDVDFQTWEVVQPSSDSEVGGAEVPERACASEEVPTLTYEERVGFKK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SRDVFGLDFGTTSAKQPTQPASELPSGRLFHAAAVISDAMYIFGGTVDNNIRSGEMYRFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SRDVFGLDFGTTSAKQPTQPASELPSGRLFHAAAVISDAMYIFGGTVDNNIRSGEMYRFQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 FSCYPKCTLHEDYGRLWESRQFCDVEFVLGEKEECVQGHVAIVTARSRWLRRKITQARER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FSCYPKCTLHEDYGRLWESRQFCDVEFVLGEKEECVQGHVAIVTARSRWLRRKITQARER
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 LAQKLEQEAAPVPREAPGVAAGGARPPLLHVAIREAEARPFEVLMQFLYTDKIKYPRKGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LAQKLEQEAAPVPREAPGVAAGGARPPLLHVAIREAEARPFEVLMQFLYTDKIKYPRKGH
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 VEDVLLIMDVYKLALSFQLCRLEQLCRQYIEASVDLQNVLVVCESAARLQLSQLKEHCLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VEDVLLIMDVYKLALSFQLCRLEQLCRQYIEASVDLQNVLVVCESAARLQLSQLKEHCLN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 FVVKESHFNQVIMMKEFERLSSPLIVEIVRRKQQPPPRTPLDQPVDIGTSLIQDMKAYLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FVVKESHFNQVIMMKEFERLSSPLIVEIVRRKQQPPPRTPLDQPVDIGTSLIQDMKAYLE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 GAGAEFCDITLLLDGHPRPAHKAILAARSSYFEAMFRSFMPEDGQVNISIGEMVPSRQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GAGAEFCDITLLLDGHPRPAHKAILAARSSYFEAMFRSFMPEDGQVNISIGEMVPSRQAF
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 ESMLRYIYYGEVNMPPEDSLYLFAAPYYYGFYNNRLQAYCKQNLEMNVTVQNVLQILEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ESMLRYIYYGEVNMPPEDSLYLFAAPYYYGFYNNRLQAYCKQNLEMNVTVQNVLQILEAA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB9 DKTQALDMKRHCLHIIVHQFTKVSKLPTLRSLSQQLLLDIIDSLASHISDKQCAELGADI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DKTQALDMKRHCLHIIVHQFTKVSKLPTLRSLSQQLLLDIIDSLASHISDKQCAELGADI
              790       800       810       820       830       840




840 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:57:44 2016 done: Thu Nov  3 23:57:44 2016
 Total Scan time:  3.700 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]