FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9504, 1314 aa
  1>>>pF1KB9504 1314 - 1314 aa - 1314 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4185+/-0.00105; mu= 18.4498+/- 0.063
 mean_var=124.7273+/-26.213, 0's: 0 Z-trim(107.5): 45  B-trim: 0 in 0/51
 Lambda= 0.114840
 statistics sampled from 9613 (9638) to 9613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.296), width:  16
 Scan time:  5.130

The best scores are:                                      opt bits E(32554)
CCDS33758.1 RNF123 gene_id:63891|Hs108|chr3        (1314) 8747 1461.8       0


>>CCDS33758.1 RNF123 gene_id:63891|Hs108|chr3             (1314 aa)
 initn: 8747 init1: 8747 opt: 8747  Z-score: 7833.8  bits: 1461.8 E(32554):    0
Smith-Waterman score: 8747; 99.9% identity (100.0% similar) in 1314 aa overlap (1-1314:1-1314)

               10        20        30        40        50        60
pF1KB9 MASKGAGMSFSRKSYRLTSDAEKSRVTGIVQEKLLNDYLNRIFSSSEHAPPAATSRKPLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MASKGAGMSFSRKSYRLTSDAEKSRVTGIVQEKLLNDYLNRIFSSSEHAPPAATSRKPLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FQNLPEHLDQLLQVDNEEEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FQNLPEHLDQLLQVDNEEEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 FGTIRSTTCVYKGKWLYEVLISSQGLMQIGWCTISCRFNQEEGVGDTHNSYAYDGNRVRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FGTIRSTTCVYKGKWLYEVLISSQGLMQIGWCTISCRFNQEEGVGDTHNSYAYDGNRVRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 WNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 FKESVAFNFGSRPLRYPVAGYRPLQDPPSADLVRAQRLLGCFRAVLSVELDPVEGRLLDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FKESVAFNFGSRPLRYPVAGYRPLQDPPSADLVRAQRLLGCFRAVLSVELDPVEGRLLDK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ESSKWRLRGQPTVLLTLAHIFHHFAPLLRKVYLVEAVLMSFLLGIVEKGTPTQAQSVVHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ESSKWRLRGQPTVLLTLAHIFHHFAPLLRKVYLVEAVLMSFLLGIVEKGTPTQAQSVVHQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VLDLLWLFMEDYEVQDCLKQLMMSLLRLYRFSPIVPDLGLQIHYLRLTIAILRHEKSRKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VLDLLWLFMEDYEVQDCLKQLMMSLLRLYRFSPIVPDLGLQIHYLRLTIAILRHEKSRKF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 LLSNVLFDVLRSVVFFYIKSPLRVEEAGLQELIPTTWWPHCSSREGKESTEMKEETAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLSNVLFDVLRSVVFFYIKSPLRVEEAGLQELIPTTWWPHCSSREGKESTEMKEETAEER
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 LRRRAYERGCQRLRKRIEVVEELQVQILKLLLDNKDDNGGEASRYIFLTKFRKFLQENAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LRRRAYERGCQRLRKRIEVVEELQVQILKLLLDNKDDNGGEASRYIFLTKFRKFLQENAS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 GRGNMPMLCPPEYMVCFLHRLISALRYYWDEYKASNPHASFSEEAYIPPQVFYNGKVDYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GRGNMPMLCPPEYMVCFLHRLISALRYYWDEYKASNPHASFSEEAYIPPQVFYNGKVDYF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 DLQRLGGLLSHLRKTLKDDFASKANIVIDPLELQSTAMDDLDEDEEPAPAMAQRPMQALA
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS33 DLQRLGGLLSHLRKTLKDDLASKANIVIDPLELQSTAMDDLDEDEEPAPAMAQRPMQALA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 VGGPLPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRPLSTSEKVKVRTLSVEQRTREDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VGGPLPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRPLSTSEKVKVRTLSVEQRTREDI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 EGSHWNEGLLLGRPPEEPEQPLTENSLLEVLDGAVMMYNLSVHQQLGKMVGVSDDVNEYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EGSHWNEGLLLGRPPEEPEQPLTENSLLEVLDGAVMMYNLSVHQQLGKMVGVSDDVNEYA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB9 MALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMLDIYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMLDIYW
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB9 LLRVCLRTIEHGDRTGSLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELPGYEETLTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLRVCLRTIEHGDRTGSLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELPGYEETLTRL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB9 AAILAKHFADARIVGTDIRDSLMQALASYVCYPHSLRAVERIPEEQRIAMVRNLLAPYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AAILAKHFADARIVGTDIRDSLMQALASYVCYPHSLRAVERIPEEQRIAMVRNLLAPYEQ
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB9 RPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKLEDANLPSLQKPCPSTLLQQHMADLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKLEDANLPSLQKPCPSTLLQQHMADLLQ
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB9 QGPDVAPSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QGPDVAPSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVS
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB9 LLRVLEMTITLVPEIFLDWTRPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLRVLEMTITLVPEIFLDWTRPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGL
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KB9 ESVDHYPILVAVTGILVQLLVRGPASEREQATSVLLADPCFQLRSICYLLGQPEPPAPGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ESVDHYPILVAVTGILVQLLVRGPASEREQATSVLLADPCFQLRSICYLLGQPEPPAPGT
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KB9 ALPAPDRKRFSLQSYADYISADELAQVEQMLAHLTSASAQAAAASLPTSEEDLCPICYAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ALPAPDRKRFSLQSYADYISADELAQVEQMLAHLTSASAQAAAASLPTSEEDLCPICYAH
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310    
pF1KB9 PISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVSVEDWEKGANTSTTSSAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVSVEDWEKGANTSTTSSAA
             1270      1280      1290      1300      1310    




1314 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:05:00 2016 done: Fri Nov  4 00:05:01 2016
 Total Scan time:  5.130 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]