Result of FASTA (omim) for
pF1KB9505
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9505, 225 aa
1>>>pF1KB9505 225 - 225 aa - 225 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3221+/-0.000371; mu= 14.5890+/- 0.023
mean_var=85.4897+/-16.623, 0's: 0 Z-trim(116.3): 445 B-trim: 574 in 1/51
Lambda= 0.138713
statistics sampled from 26910 (27434) to 26910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.322), width: 16
Scan time: 6.160
The best scores are: opt bits E(85289)
NP_055814 (OMIM: 612398) ras-related protein Rab-2 ( 225) 1496 308.8 4.8e-84
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216) 547 118.9 6.9e-27
NP_958842 (OMIM: 604037) ras-related protein Rab-5 ( 216) 547 118.9 6.9e-27
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216) 547 118.9 6.9e-27
XP_011523393 (OMIM: 604037) PREDICTED: ras-related ( 216) 547 118.9 6.9e-27
NP_001238968 (OMIM: 604037) ras-related protein Ra ( 249) 547 118.9 7.6e-27
NP_004153 (OMIM: 179512) ras-related protein Rab-5 ( 215) 514 112.3 6.7e-25
XP_005269108 (OMIM: 179514) PREDICTED: ras-related ( 215) 494 108.3 1.1e-23
NP_001238965 (OMIM: 179514) ras-related protein Ra ( 215) 494 108.3 1.1e-23
XP_005269109 (OMIM: 179514) PREDICTED: ras-related ( 215) 494 108.3 1.1e-23
NP_002859 (OMIM: 179514) ras-related protein Rab-5 ( 215) 494 108.3 1.1e-23
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207) 489 107.2 2.1e-23
NP_006859 (OMIM: 605694) ras-related protein Rab-3 ( 195) 486 106.6 3e-23
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203) 485 106.4 3.6e-23
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203) 485 106.4 3.6e-23
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203) 485 106.4 3.6e-23
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203) 485 106.4 3.6e-23
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 483 106.0 4.7e-23
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205) 476 104.6 1.3e-22
NP_065724 (OMIM: 612966) ras-related protein Rab-2 ( 194) 474 104.2 1.6e-22
NP_071894 (OMIM: 602206) ras-related protein Rab-1 ( 212) 469 103.2 3.4e-22
XP_016881017 (OMIM: 605694) PREDICTED: ras-related ( 248) 465 102.5 6.6e-22
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212) 463 102.0 7.8e-22
NP_057406 (OMIM: 612673) ras-related protein Rab-1 ( 215) 462 101.8 9e-22
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 460 101.4 1.2e-21
XP_016881018 (OMIM: 605694) PREDICTED: ras-related ( 244) 460 101.5 1.3e-21
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215) 454 100.2 2.7e-21
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219) 450 99.5 4.8e-21
NP_057661 (OMIM: 615852) ras-related protein Rab-6 ( 208) 449 99.2 5.4e-21
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218) 448 99.1 6.4e-21
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201) 447 98.8 6.9e-21
NP_002860 (OMIM: 179513) ras-related protein Rab-6 ( 208) 442 97.8 1.4e-20
NP_942599 (OMIM: 179513) ras-related protein Rab-6 ( 208) 440 97.4 1.9e-20
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216) 439 97.2 2.2e-20
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216) 439 97.2 2.2e-20
NP_001026847 (OMIM: 612415) ras-related protein Ra ( 203) 435 96.4 3.7e-20
NP_570137 (OMIM: 612415) ras-related protein Rab-2 ( 203) 435 96.4 3.7e-20
NP_001020471 (OMIM: 616448) ras-related protein Ra ( 244) 431 95.7 7.3e-20
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 428 95.0 9.6e-20
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206) 426 94.6 1.3e-19
NP_741995 (OMIM: 300774) ras-related protein Rab-3 ( 213) 425 94.4 1.5e-19
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225) 425 94.5 1.6e-19
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227) 425 94.5 1.6e-19
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 424 94.2 1.7e-19
NP_115520 (OMIM: 612909) ras-related protein Rab-6 ( 254) 423 94.1 2.3e-19
NP_004569 (OMIM: 179511) ras-related protein Rab-4 ( 218) 422 93.8 2.3e-19
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219) 422 93.8 2.4e-19
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219) 422 93.8 2.4e-19
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220) 422 93.9 2.4e-19
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220) 422 93.9 2.4e-19
>>NP_055814 (OMIM: 612398) ras-related protein Rab-21 [H (225 aa)
initn: 1496 init1: 1496 opt: 1496 Z-score: 1629.9 bits: 308.8 E(85289): 4.8e-84
Smith-Waterman score: 1496; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)
10 20 30 40 50 60
pF1KB9 MAAAGGGGGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAAAGGGGGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM
130 140 150 160 170 180
190 200 210 220
pF1KB9 IETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
:::::::::::::::::::::::::::::::::::::::::::::
NP_055 IETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
190 200 210 220
>>NP_004574 (OMIM: 604037) ras-related protein Rab-5C is (216 aa)
initn: 582 init1: 507 opt: 547 Z-score: 603.7 bits: 118.9 E(85289): 6.9e-27
Smith-Waterman score: 563; 39.8% identity (74.3% similar) in 226 aa overlap (1-224:1-216)
10 20 30 40 50
pF1KB9 MAAAGGGG--GGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLT
::. ::.. .: ::... .::.:::::. :::.:::::. ...:.. . .:. :.:::
NP_004 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR
. . . :.. :::::::::.:.:.:.::: ...::.:::::. :.: ..:::::::.
NP_004 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 KMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK
.. . .: . ..::: :: ..: : .:::..::.. . ..:::: ...:.:. . :
NP_004 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
130 140 150 160 170 180
180 190 200 210 220
pF1KB9 RMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
.. . :... :: : ::.. ...: .... :::.
NP_004 KL------PKNEPQNATGAPGRNR-GVDLQENNPASRSQ---CCSN
190 200 210
>>NP_958842 (OMIM: 604037) ras-related protein Rab-5C is (216 aa)
initn: 582 init1: 507 opt: 547 Z-score: 603.7 bits: 118.9 E(85289): 6.9e-27
Smith-Waterman score: 563; 39.8% identity (74.3% similar) in 226 aa overlap (1-224:1-216)
10 20 30 40 50
pF1KB9 MAAAGGGG--GGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLT
::. ::.. .: ::... .::.:::::. :::.:::::. ...:.. . .:. :.:::
NP_958 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR
. . . :.. :::::::::.:.:.:.::: ...::.:::::. :.: ..:::::::.
NP_958 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 KMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK
.. . .: . ..::: :: ..: : .:::..::.. . ..:::: ...:.:. . :
NP_958 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
130 140 150 160 170 180
180 190 200 210 220
pF1KB9 RMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
.. . :... :: : ::.. ...: .... :::.
NP_958 KL------PKNEPQNATGAPGRNR-GVDLQENNPASRSQ---CCSN
190 200 210
>>XP_011523392 (OMIM: 604037) PREDICTED: ras-related pro (216 aa)
initn: 582 init1: 507 opt: 547 Z-score: 603.7 bits: 118.9 E(85289): 6.9e-27
Smith-Waterman score: 563; 39.8% identity (74.3% similar) in 226 aa overlap (1-224:1-216)
10 20 30 40 50
pF1KB9 MAAAGGGG--GGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLT
::. ::.. .: ::... .::.:::::. :::.:::::. ...:.. . .:. :.:::
XP_011 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR
. . . :.. :::::::::.:.:.:.::: ...::.:::::. :.: ..:::::::.
XP_011 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 KMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK
.. . .: . ..::: :: ..: : .:::..::.. . ..:::: ...:.:. . :
XP_011 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
130 140 150 160 170 180
180 190 200 210 220
pF1KB9 RMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
.. . :... :: : ::.. ...: .... :::.
XP_011 KL------PKNEPQNATGAPGRNR-GVDLQENNPASRSQ---CCSN
190 200 210
>>XP_011523393 (OMIM: 604037) PREDICTED: ras-related pro (216 aa)
initn: 582 init1: 507 opt: 547 Z-score: 603.7 bits: 118.9 E(85289): 6.9e-27
Smith-Waterman score: 563; 39.8% identity (74.3% similar) in 226 aa overlap (1-224:1-216)
10 20 30 40 50
pF1KB9 MAAAGGGG--GGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLT
::. ::.. .: ::... .::.:::::. :::.:::::. ...:.. . .:. :.:::
XP_011 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR
. . . :.. :::::::::.:.:.:.::: ...::.:::::. :.: ..:::::::.
XP_011 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 KMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK
.. . .: . ..::: :: ..: : .:::..::.. . ..:::: ...:.:. . :
XP_011 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
130 140 150 160 170 180
180 190 200 210 220
pF1KB9 RMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
.. . :... :: : ::.. ...: .... :::.
XP_011 KL------PKNEPQNATGAPGRNR-GVDLQENNPASRSQ---CCSN
190 200 210
>>NP_001238968 (OMIM: 604037) ras-related protein Rab-5C (249 aa)
initn: 584 init1: 507 opt: 547 Z-score: 602.9 bits: 118.9 E(85289): 7.6e-27
Smith-Waterman score: 563; 39.8% identity (74.3% similar) in 226 aa overlap (1-224:34-249)
10 20
pF1KB9 MAAAGGGG--GGAAAAGRAYSFKVVLLGEG
::. ::.. .: ::... .::.:::::.
NP_001 SWRSPSPLSASLHSTSPHPHALWTTTAGRAMAGRGGAARPNGPAAGNKICQFKLVLLGES
10 20 30 40 50 60
30 40 50 60 70 80
pF1KB9 CVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY
:::.:::::. ...:.. . .:. :.:::. . . :.. :::::::::.:.:.:.:
NP_001 AVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB9 YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAE
:: ...::.:::::. :.: ..:::::::... . .: . ..::: :: ..: : .:::.
NP_001 YRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQ
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB9 SYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQII
.::.. . ..:::: ...:.:. . :.. . :... :: : ::..
NP_001 AYADDNSLLFMETSAKTAMNVNEIFMAIAKKL------PKNEPQNATGAPGRNR-GVDLQ
190 200 210 220 230
210 220
pF1KB9 DDEPQAQTSGGGCCSSG
...: .... :::.
NP_001 ENNPASRSQ---CCSN
240
>>NP_004153 (OMIM: 179512) ras-related protein Rab-5A is (215 aa)
initn: 555 init1: 505 opt: 514 Z-score: 568.1 bits: 112.3 E(85289): 6.7e-25
Smith-Waterman score: 536; 40.8% identity (73.2% similar) in 228 aa overlap (1-224:1-215)
10 20 30 40 50
pF1KB9 MAAAGGG-GGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTK
::. :. .: .... .::.:::::. :::.:::::. ...:.. . .:. :.:::.
NP_004 MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK
. . :.. :::::::::.:.:.:.::: ...::.:::::.:.:: ..:::::::..
NP_004 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 MLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR
. . .: . . ::: :: ..: :..:::.:::.. . ..:::: . ...:.:. . :.
NP_004 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK
130 140 150 160 170 180
180 190 200 210 220
pF1KB9 MIETAQVDERAKGNGSSQPG--TAR-RGVQIIDDEPQAQTSGGGCCSSG
. . : ..:: .:: :::.. :: .: . . :::.
NP_004 LPK----------NEPQNPGANSARGRGVDLT--EP-TQPTRNQCCSN
190 200 210
>>XP_005269108 (OMIM: 179514) PREDICTED: ras-related pro (215 aa)
initn: 502 init1: 484 opt: 494 Z-score: 546.4 bits: 108.3 E(85289): 1.1e-23
Smith-Waterman score: 517; 38.6% identity (73.0% similar) in 215 aa overlap (10-224:11-215)
10 20 30 40 50
pF1KB9 MAAAGGGGGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTK
: :.. .::.:::::. :::.:::::. ...:.. . .:. :.:::.
XP_005 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK
.. . :.. :::::::::.:.:.:.::: ...::.:::::....: ..:.:::::..
XP_005 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 MLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR
. . : . ..::: :: ..: : .::..::.. . ..:::: ....::: . :.
XP_005 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
130 140 150 160 170 180
180 190 200 210 220
pF1KB9 MIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
. :.. .. :.: :. . .: . :.: . . :::.
XP_005 L---------PKSEPQNLGGAAGRS-RGVDLHEQSQQNKSQCCSN
190 200 210
>>NP_001238965 (OMIM: 179514) ras-related protein Rab-5B (215 aa)
initn: 502 init1: 484 opt: 494 Z-score: 546.4 bits: 108.3 E(85289): 1.1e-23
Smith-Waterman score: 517; 38.6% identity (73.0% similar) in 215 aa overlap (10-224:11-215)
10 20 30 40 50
pF1KB9 MAAAGGGGGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTK
: :.. .::.:::::. :::.:::::. ...:.. . .:. :.:::.
NP_001 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK
.. . :.. :::::::::.:.:.:.::: ...::.:::::....: ..:.:::::..
NP_001 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 MLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR
. . : . ..::: :: ..: : .::..::.. . ..:::: ....::: . :.
NP_001 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
130 140 150 160 170 180
180 190 200 210 220
pF1KB9 MIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
. :.. .. :.: :. . .: . :.: . . :::.
NP_001 L---------PKSEPQNLGGAAGRS-RGVDLHEQSQQNKSQCCSN
190 200 210
>>XP_005269109 (OMIM: 179514) PREDICTED: ras-related pro (215 aa)
initn: 502 init1: 484 opt: 494 Z-score: 546.4 bits: 108.3 E(85289): 1.1e-23
Smith-Waterman score: 517; 38.6% identity (73.0% similar) in 215 aa overlap (10-224:11-215)
10 20 30 40 50
pF1KB9 MAAAGGGGGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTK
: :.. .::.:::::. :::.:::::. ...:.. . .:. :.:::.
XP_005 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK
.. . :.. :::::::::.:.:.:.::: ...::.:::::....: ..:.:::::..
XP_005 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 MLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR
. . : . ..::: :: ..: : .::..::.. . ..:::: ....::: . :.
XP_005 QASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK
130 140 150 160 170 180
180 190 200 210 220
pF1KB9 MIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
. :.. .. :.: :. . .: . :.: . . :::.
XP_005 L---------PKSEPQNLGGAAGRS-RGVDLHEQSQQNKSQCCSN
190 200 210
225 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:05:43 2016 done: Fri Nov 4 00:05:44 2016
Total Scan time: 6.160 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]