FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9506, 442 aa
  1>>>pF1KB9506 442 - 442 aa - 442 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4886+/-0.000905; mu= -5.2309+/- 0.054
 mean_var=299.1957+/-60.571, 0's: 0 Z-trim(115.6): 38  B-trim: 4 in 1/50
 Lambda= 0.074148
 statistics sampled from 16170 (16206) to 16170 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.498), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS30661.1 SDC3 gene_id:9672|Hs108|chr1           ( 442) 2855 318.5 8.2e-87


>>CCDS30661.1 SDC3 gene_id:9672|Hs108|chr1                (442 aa)
 initn: 2855 init1: 2855 opt: 2855  Z-score: 1672.1  bits: 318.5 E(32554): 8.2e-87
Smith-Waterman score: 2855; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442)

               10        20        30        40        50        60
pF1KB9 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
              370       380       390       400       410       420

              430       440  
pF1KB9 LEEPKQASVTYQKPDKQEEFYA
       ::::::::::::::::::::::
CCDS30 LEEPKQASVTYQKPDKQEEFYA
              430       440  




442 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:06:16 2016 done: Fri Nov  4 00:06:17 2016
 Total Scan time:  3.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]