FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9519, 373 aa
  1>>>pF1KB9519 373 - 373 aa - 373 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2797+/-0.000901; mu= 16.6238+/- 0.054
 mean_var=144.0154+/-54.448, 0's: 0 Z-trim(107.2): 241  B-trim: 1154 in 2/44
 Lambda= 0.106873
 statistics sampled from 8965 (9415) to 8965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.289), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS14349.1 GPR173 gene_id:54328|Hs108|chrX        ( 373) 2570 408.6 4.6e-114
CCDS5758.1 GPR85 gene_id:54329|Hs108|chr7          ( 370) 1687 272.4 4.4e-73
CCDS2915.1 GPR27 gene_id:2850|Hs108|chr3           ( 375) 1379 225.0 8.7e-59


>>CCDS14349.1 GPR173 gene_id:54328|Hs108|chrX             (373 aa)
 initn: 2570 init1: 2570 opt: 2570  Z-score: 2161.3  bits: 408.6 E(32554): 4.6e-114
Smith-Waterman score: 2570; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB9 MANTTGEPEEVSGALSPPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MANTTGEPEEVSGALSPPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LLDLCLADGIRSAVCFPFVLASVRHGSSWTFSALSCKIVAFMAVLFCFHAAFMLFCISVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLDLCLADGIRSAVCFPFVLASVRHGSSWTFSALSCKIVAFMAVLFCFHAAFMLFCISVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RYMAIAHHRFYAKRMTLWTCAAVICMAWTLSVAMAFPPVFDVGTYKFIREEDQCIFEHRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RYMAIAHHRFYAKRMTLWTCAAVICMAWTLSVAMAFPPVFDVGTYKFIREEDQCIFEHRY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 FKANDTLGFMLMLAVLMAATHAVYGKLLLFEYRHRKMKPVQMVPAISQNWTFHGPGATGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FKANDTLGFMLMLAVLMAATHAVYGKLLLFEYRHRKMKPVQMVPAISQNWTFHGPGATGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 AAANWIAGFGRGPMPPTLLGIRQNGHAASRRLLGMDEVKGEKQLGRMFYAITLLFLLLWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AAANWIAGFGRGPMPPTLLGIRQNGHAASRRLLGMDEVKGEKQLGRMFYAITLLFLLLWS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 PYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKCLRTHAPCWGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKCLRTHAPCWGT
              310       320       330       340       350       360

              370   
pF1KB9 GGAPAPREPYCVM
       :::::::::::::
CCDS14 GGAPAPREPYCVM
              370   

>>CCDS5758.1 GPR85 gene_id:54329|Hs108|chr7               (370 aa)
 initn: 1698 init1: 1293 opt: 1687  Z-score: 1425.6  bits: 272.4 E(32554): 4.4e-73
Smith-Waterman score: 1687; 62.4% identity (86.9% similar) in 375 aa overlap (1-373:1-370)

               10        20        30        40        50        60
pF1KB9 MANTTGEPEEVSGALSPPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYF
       ::: .   ...   :::   .:..::. ::.:. ::..:: ..:.:..:...::.:::::
CCDS57 MANYSHAADNILQNLSP--LTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYF
               10          20        30        40        50        

               70        80        90       100       110       120
pF1KB9 LLDLCLADGIRSAVCFPFVLASVRHGSSWTFSALSCKIVAFMAVLFCFHAAFMLFCISVT
       ::::: .: .:::.:::::. ::..::.::...:.::..::..:: :::.::::::::::
CCDS57 LLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVT
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB9 RYMAIAHHRFYAKRMTLWTCAAVICMAWTLSVAMAFPPVFDVGTYKFIREEDQCIFEHRY
       ::.::::::::.::.:.::: :::::.::::::::::::.:::::.:::::::: :.:: 
CCDS57 RYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQCTFQHRS
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB9 FKANDTLGFMLMLAVLMAATHAVYGKLLLFEYRHRKMKPVQMVPAISQNWTFHGPGATGQ
       :.:::.:::::.::... ::. :: ::..: . .:::::::.: :.:::::::::::.::
CCDS57 FRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQ
      180       190       200       210       220       230        

              250       260       270        280       290         
pF1KB9 AAANWIAGFGRGPMPPTLLGIRQNGHAASRR-LLGMDEVKGEKQLGRMFYAITLLFLLLW
       :::::.::::::: ::::::::::.....:: :: .:: : ::...:::: .:.::: ::
CCDS57 AAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLW
      240       250       260       270       280       290        

     300       310       320       330       340       350         
pF1KB9 SPYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKCLRTHA-PCW
       .::.::::::::... .::  .:..:::::::::..::.::.. :..:..:. :    : 
CCDS57 GPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCR
      300       310       320       330       340       350        

      360       370   
pF1KB9 GTGGAPAPREPYCVM
        .     :::::::.
CCDS57 KSR---LPREPYCVI
      360          370

>>CCDS2915.1 GPR27 gene_id:2850|Hs108|chr3                (375 aa)
 initn: 970 init1: 398 opt: 1379  Z-score: 1168.9  bits: 225.0 E(32554): 8.7e-59
Smith-Waterman score: 1379; 54.7% identity (83.4% similar) in 362 aa overlap (1-357:1-355)

               10        20        30        40        50        60
pF1KB9 MANTTGEPEEVSGALSPPSASAYVKLVLLGLIMCVSLAGNAILSLLVLKERALHKAPYYF
       :::.. ::   .:. .  .:.  .::. :.:..:::::::....::...::.::.::::.
CCDS29 MANAS-EP---GGSGGGEAAALGLKLATLSLLLCVSLAGNVLFALLIVRERSLHRAPYYL
                   10        20        30        40        50      

               70        80        90          100       110       
pF1KB9 LLDLCLADGIRSAVCFPFVLASVRHGSSWTFS---ALSCKIVAFMAVLFCFHAAFMLFCI
       :::::::::.:. .:.: :. ..:.... . .   ::.::..::.:.::::::::.:. .
CCDS29 LLDLCLADGLRALACLPAVMLAARRAAAAAGAPPGALGCKLLAFLAALFCFHAAFLLLGV
         60        70        80        90       100       110      

       120       130       140        150       160       170      
pF1KB9 SVTRYMAIAHHRFYAKRMTLWTCAAV-ICMAWTLSVAMAFPPVFDVGTYKFIREEDQCIF
       .::::.:::::::::.:.. : :::. .: ::.:..: :::::.: :      :.  : .
CCDS29 GVTRYLAIAHHRFYAERLAGWPCAAMLVCAAWALALAAAFPPVLDGGGDD---EDAPCAL
        120       130       140       150       160          170   

        180       190       200       210       220       230      
pF1KB9 EHRYFKANDTLGFMLMLAVLMAATHAVYGKLLLFEYRHRKMKPVQMVPAISQNWTFHGPG
       :.:   :  .:::.:.:::...::: :: .::.: . .:::.:...:::.:..:::::::
CCDS29 EQRPDGAPGALGFLLLLAVVVGATHLVYLRLLFFIHDRRKMRPARLVPAVSHDWTFHGPG
           180       190       200       210       220       230   

        240       250       260        270       280       290     
pF1KB9 ATGQAAANWIAGFGRGPMPPTLLGIRQNGHA-ASRRLLGMDEVKGEKQLGRMFYAITLLF
       ::::::::: ::::::: ::.:.:::  : . ..:::: ..: : ::.: .::::.::::
CCDS29 ATGQAAANWTAGFGRGPTPPALVGIRPAGPGRGARRLLVLEEFKTEKRLCKMFYAVTLLF
           240       250       260       270       280       290   

         300       310       320       330       340       350     
pF1KB9 LLLWSPYIVACYWRVFVKACAVPHRYLATAVWMSFAQAAVNPIVCFLLNKDLKKCLRTHA
       ::::.::.:: : ::.:.  :::. ::...::..::::..::.::::.:..:. :.:.. 
CCDS29 LLLWGPYVVASYLRVLVRPGAVPQAYLTASVWLTFAQAGINPVVCFLFNRELRDCFRAQF
           300       310       320       330       340       350   

         360       370       
pF1KB9 PCWGTGGAPAPREPYCVM    
       ::                    
CCDS29 PCCQSPRTTQATHPCDLKGIGL
           360       370     




373 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:12:12 2016 done: Fri Nov  4 00:12:12 2016
 Total Scan time:  2.100 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]