FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9548, 127 aa
  1>>>pF1KB9548 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6331+/-0.000675; mu= 9.9785+/- 0.041
 mean_var=80.9918+/-16.119, 0's: 0 Z-trim(111.4): 12  B-trim: 0 in 0/52
 Lambda= 0.142513
 statistics sampled from 12326 (12331) to 12326 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.379), width:  16
 Scan time:  1.680

The best scores are:                                      opt bits E(32554)
CCDS13963.1 POLR2F gene_id:5435|Hs108|chr22        ( 127)  842 181.7 1.1e-46
CCDS77673.1 POLR2F gene_id:5435|Hs108|chr22        ( 158)  650 142.3 9.8e-35


>>CCDS13963.1 POLR2F gene_id:5435|Hs108|chr22             (127 aa)
 initn: 842 init1: 842 opt: 842  Z-score: 951.8  bits: 181.7 E(32554): 1.1e-46
Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
               70        80        90       100       110       120

              
pF1KB9 DELIITD
       :::::::
CCDS13 DELIITD
              

>>CCDS77673.1 POLR2F gene_id:5435|Hs108|chr22             (158 aa)
 initn: 650 init1: 650 opt: 650  Z-score: 737.1  bits: 142.3 E(32554): 9.8e-35
Smith-Waterman score: 650; 99.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
       :::::::::::::::::::::::::::::::::::::.::                    
CCDS77 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNARSASEPPGEEPPWMDRGTRDE
               70        80        90       100       110       120

                                             
pF1KB9 DELIITD                               
                                             
CCDS77 HLPSCPGCPAVASNTRCCPPAACLPGISLSRRRRLREE
              130       140       150        




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:09:35 2016 done: Fri Nov  4 17:09:36 2016
 Total Scan time:  1.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]