Result of FASTA (omim) for
pF1KB9548
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9548, 127 aa
1>>>pF1KB9548 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9854+/-0.000295; mu= 7.7370+/- 0.019
mean_var=84.4987+/-16.862, 0's: 0 Z-trim(118.8): 7 B-trim: 869 in 1/52
Lambda= 0.139524
statistics sampled from 32030 (32036) to 32030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.376), width: 16
Scan time: 4.960
The best scores are: opt bits E(85289)
NP_068809 (OMIM: 604414) DNA-directed RNA polymera ( 127) 842 178.3 2.9e-45
NP_001288060 (OMIM: 604414) DNA-directed RNA polym ( 105) 654 140.4 6.1e-34
NP_001288059 (OMIM: 604414) DNA-directed RNA polym ( 158) 650 139.7 1.5e-33
XP_016884321 (OMIM: 604414) PREDICTED: DNA-directe ( 111) 638 137.2 5.9e-33
NP_001288058 (OMIM: 604414) DNA-directed RNA polym ( 118) 637 137.0 7.2e-33
>>NP_068809 (OMIM: 604414) DNA-directed RNA polymerases (127 aa)
initn: 842 init1: 842 opt: 842 Z-score: 933.7 bits: 178.3 E(85289): 2.9e-45
Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
70 80 90 100 110 120
pF1KB9 DELIITD
:::::::
NP_068 DELIITD
>>NP_001288060 (OMIM: 604414) DNA-directed RNA polymeras (105 aa)
initn: 739 init1: 654 opt: 654 Z-score: 730.4 bits: 140.4 E(85289): 6.1e-34
Smith-Waterman score: 654; 97.1% identity (99.0% similar) in 102 aa overlap (1-102:1-102)
10 20 30 40 50 60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
:::::::::::::::::::::::::::::::::::::: :..
NP_001 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKRRRLREE
70 80 90 100
pF1KB9 DELIITD
>>NP_001288059 (OMIM: 604414) DNA-directed RNA polymeras (158 aa)
initn: 650 init1: 650 opt: 650 Z-score: 723.4 bits: 139.7 E(85289): 1.5e-33
Smith-Waterman score: 650; 99.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)
10 20 30 40 50 60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
:::::::::::::::::::::::::::::::::::::.::
NP_001 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNARSASEPPGEEPPWMDRGTRDE
70 80 90 100 110 120
pF1KB9 DELIITD
NP_001 HLPSCPGCPAVASNTRCCPPAACLPGISLSRRRRLREE
130 140 150
>>XP_016884321 (OMIM: 604414) PREDICTED: DNA-directed RN (111 aa)
initn: 638 init1: 638 opt: 638 Z-score: 712.6 bits: 137.2 E(85289): 5.9e-33
Smith-Waterman score: 638; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)
10 20 30 40 50 60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
:::::::::::::::::::::::::::::::::::::
XP_016 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNYFQKAFEEAPVQG
70 80 90 100 110
pF1KB9 DELIITD
>>NP_001288058 (OMIM: 604414) DNA-directed RNA polymeras (118 aa)
initn: 637 init1: 637 opt: 637 Z-score: 711.1 bits: 137.0 E(85289): 7.2e-33
Smith-Waterman score: 637; 99.0% identity (100.0% similar) in 98 aa overlap (30-127:21-118)
10 20 30 40 50 60
pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY
.::::::::::::::::::::::::::::::
NP_001 MVSISCLVIRPPRPPKVLGLQEGQENVEILPSGERPQANQKRITTPYMTKY
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV
60 70 80 90 100 110
pF1KB9 DELIITD
:::::::
NP_001 DELIITD
127 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:09:36 2016 done: Fri Nov 4 17:09:37 2016
Total Scan time: 4.960 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]