FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9553, 261 aa
  1>>>pF1KB9553 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7195+/-0.000338; mu= 6.0336+/- 0.021
 mean_var=187.9332+/-36.639, 0's: 0 Z-trim(122.2): 18  B-trim: 331 in 1/55
 Lambda= 0.093556
 statistics sampled from 39930 (39960) to 39930 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.469), width:  16
 Scan time:  7.920

The best scores are:                                      opt bits E(85289)
NP_005071 (OMIM: 194355,612371) X-box-binding prot ( 261) 1732 245.1 9.3e-65
NP_001073007 (OMIM: 194355,612371) X-box-binding p ( 376) 1040 151.9 1.6e-36


>>NP_005071 (OMIM: 194355,612371) X-box-binding protein   (261 aa)
 initn: 1732 init1: 1732 opt: 1732  Z-score: 1283.6  bits: 245.1 E(85289): 9.3e-65
Smith-Waterman score: 1732; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB9 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVP
              190       200       210       220       230       240

              250       260 
pF1KB9 YQPPFLCQWGRHQPSWKPLMN
       :::::::::::::::::::::
NP_005 YQPPFLCQWGRHQPSWKPLMN
              250       260 

>>NP_001073007 (OMIM: 194355,612371) X-box-binding prote  (376 aa)
 initn: 1040 init1: 1040 opt: 1040  Z-score: 776.8  bits: 151.9 E(85289): 1.6e-36
Smith-Waterman score: 1040; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KB9 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQL
       ::::::::::::::::::::::::::::::::::::::::::::::              
NP_001 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAAGAGPVVTPPEHLPM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVP
                                                                   
NP_001 DSGGIDSSDSESDILLGILDNLDPVMFFKCPSPEPASLEELPEVYPEGPSSLPASLSLSV
              190       200       210       220       230       240




261 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:12:37 2016 done: Fri Nov  4 17:12:38 2016
 Total Scan time:  7.920 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]