FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9554, 170 aa
  1>>>pF1KB9554 170 - 170 aa - 170 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8216+/-0.000581; mu= 7.2961+/- 0.035
 mean_var=115.0570+/-23.315, 0's: 0 Z-trim(116.6): 1  B-trim: 1065 in 1/53
 Lambda= 0.119569
 statistics sampled from 17260 (17261) to 17260 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.53), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS13868.1 ZMAT5 gene_id:55954|Hs108|chr22        ( 170) 1233 222.0 1.4e-58


>>CCDS13868.1 ZMAT5 gene_id:55954|Hs108|chr22             (170 aa)
 initn: 1233 init1: 1233 opt: 1233  Z-score: 1165.0  bits: 222.0 E(32554): 1.4e-58
Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KB9 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR
               70        80        90       100       110       120

              130       140       150       160       170
pF1KB9 LSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG
              130       140       150       160       170




170 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:13:10 2016 done: Fri Nov  4 17:13:10 2016
 Total Scan time:  2.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]