FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9573, 375 aa
  1>>>pF1KB9573 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8289+/-0.000966; mu= 4.7689+/- 0.059
 mean_var=284.0179+/-56.128, 0's: 0 Z-trim(114.9): 14  B-trim: 383 in 1/53
 Lambda= 0.076103
 statistics sampled from 15402 (15411) to 15402 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.473), width:  16
 Scan time:  3.080

The best scores are:                                      opt bits E(32554)
CCDS34344.1 DEK gene_id:7913|Hs108|chr6            ( 375) 2379 273.9 1.6e-73
CCDS47382.1 DEK gene_id:7913|Hs108|chr6            ( 341) 1865 217.5 1.4e-56


>>CCDS34344.1 DEK gene_id:7913|Hs108|chr6                 (375 aa)
 initn: 2379 init1: 2379 opt: 2379  Z-score: 1433.6  bits: 273.9 E(32554): 1.6e-73
Smith-Waterman score: 2379; 99.5% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KB9 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKEKSLIVEGKREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKEKSLIVEGKREK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KKVERLTMQVSSLQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKVERLTMQVSSLQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SSLKKNVGQFSGFPFEKGSAQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS34 SSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 EESSEDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EESSDDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
              310       320       330       340       350       360

              370     
pF1KB9 ERKDFIKTTVKELIS
       :::::::::::::::
CCDS34 ERKDFIKTTVKELIS
              370     

>>CCDS47382.1 DEK gene_id:7913|Hs108|chr6                 (341 aa)
 initn: 1859 init1: 1859 opt: 1865  Z-score: 1129.1  bits: 217.5 E(32554): 1.4e-56
Smith-Waterman score: 2096; 90.4% identity (90.9% similar) in 375 aa overlap (1-375:1-341)

               10        20        30        40        50        60
pF1KB9 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKEKSLIVEGKREK
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS47 MSASAPAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEK------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB9 KKVERLTMQVSSLQREPFTIAQGKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
                             ::::::::::::::::::::::::::::::::::::::
CCDS47 ----------------------GKGQKLCEIERIHFFLSKKKTDELRNLHKLLYNRPGTV
                             50        60        70        80      

              130       140       150       160       170       180
pF1KB9 SSLKKNVGQFSGFPFEKGSAQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS47 SSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRIL
         90       100       110       120       130       140      

              190       200       210       220       230       240
pF1KB9 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NFLMHPKPSGKPLPKSKKTCSKGSKKERNSSGMARKAKRTKCPEILSDESSSDEDEKKNK
        150       160       170       180       190       200      

              250       260       270       280       290       300
pF1KB9 EESSEDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EESSDDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKADSSTTKKNQNSSKKE
        210       220       230       240       250       260      

              310       320       330       340       350       360
pF1KB9 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SESEDSSDDEPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT
        270       280       290       300       310       320      

              370     
pF1KB9 ERKDFIKTTVKELIS
       :::::::::::::::
CCDS47 ERKDFIKTTVKELIS
        330       340 




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:25:40 2016 done: Fri Nov  4 17:25:41 2016
 Total Scan time:  3.080 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]