FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9580, 181 aa
  1>>>pF1KB9580 181 - 181 aa - 181 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8337+/-0.000691; mu= 11.6847+/- 0.042
 mean_var=93.2076+/-18.280, 0's: 0 Z-trim(112.4): 46  B-trim: 3 in 1/50
 Lambda= 0.132846
 statistics sampled from 13115 (13160) to 13115 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.404), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS7795.1 ASCL3 gene_id:56676|Hs108|chr11         ( 181) 1247 248.1 2.2e-66
CCDS59202.1 ASCL5 gene_id:647219|Hs108|chr1        ( 206)  352 76.6 1.1e-14
CCDS31894.2 ASCL4 gene_id:121549|Hs108|chr12       ( 173)  308 68.1 3.2e-12


>>CCDS7795.1 ASCL3 gene_id:56676|Hs108|chr11              (181 aa)
 initn: 1247 init1: 1247 opt: 1247  Z-score: 1305.2  bits: 248.1 E(32554): 2.2e-66
Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB9 MMDNRGNSSLPDKLPIFPDSARLPLTRSFYLEPMVTFHVHPEAPVSSPYSEELPRLPFPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MMDNRGNSSLPDKLPIFPDSARLPLTRSFYLEPMVTFHVHPEAPVSSPYSEELPRLPFPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DSLILGNYSEPCPFSFPMPYPNYRGCEYSYGPAFTRKRNERERQRVKCVNEGYAQLRHHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DSLILGNYSEPCPFSFPMPYPNYRGCEYSYGPAFTRKRNERERQRVKCVNEGYAQLRHHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PEEYLEKRLSKVETLRAAIKYINYLQSLLYPDKAETKNNPGKVSSMIATTSHHADPMFRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PEEYLEKRLSKVETLRAAIKYINYLQSLLYPDKAETKNNPGKVSSMIATTSHHADPMFRI
              130       140       150       160       170       180

        
pF1KB9 V
       :
CCDS77 V
        

>>CCDS59202.1 ASCL5 gene_id:647219|Hs108|chr1             (206 aa)
 initn: 337 init1: 312 opt: 352  Z-score: 377.4  bits: 76.6 E(32554): 1.1e-14
Smith-Waterman score: 354; 44.1% identity (58.2% similar) in 170 aa overlap (2-161:1-153)

               10        20        30        40        50        60
pF1KB9 MMDNRGNSSLPDKLPIFPDSARLPLTRSFYLEPMVTFHVHPEAPVSSPYSEELPRLPFPS
        :.:    .: :. :. :     :   .. . :       :   .  : .: :  .::  
CCDS59  MNNNFCRALVDRRPLGP-----PSCMQLGVMP-------PPRQAPLPPAEPLGNVPF--
                10             20               30        40       

               70               80         90       100       110  
pF1KB9 DSLILGNYSEPCPFS------FP-MPYPNYRGC-EYSYGPAFTRKRNERERQRVKCVNEG
         :.  . .:: :.       :: .:.:.  :  :: . ::: .::::::::::::::::
CCDS59 --LLYPGPAEP-PYYDAYAGVFPYVPFPGAFGVYEYPFEPAFIQKRNERERQRVKCVNEG
            50         60        70        80        90       100  

            120       130       140       150         160       170
pF1KB9 YAQLRHHLPEEYLEKRLSKVETLRAAIKYINYLQSLLY--PDKAETKNNPGKVSSMIATT
       ::.:: :::    ::::::::::::::.::.::: ::   :: .    . :         
CCDS59 YARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTPPASRGLPGTGPCPA
            110       120       130       140       150       160  

              180                                  
pF1KB9 SHHADPMFRIV                                 
                                                   
CCDS59 PPATPRPDRPGDGEARAPSSLVPESSESSCFSPSPFLESEESWH
            170       180       190       200      

>>CCDS31894.2 ASCL4 gene_id:121549|Hs108|chr12            (173 aa)
 initn: 320 init1: 300 opt: 308  Z-score: 332.8  bits: 68.1 E(32554): 3.2e-12
Smith-Waterman score: 308; 47.3% identity (61.2% similar) in 129 aa overlap (22-149:10-129)

               10        20        30        40        50        60
pF1KB9 MMDNRGNSSLPDKLPIFPDSARLPLTRSFYLEPMVTFHVHPEAPVSSPYSEELPRLPFPS
                            :: :  :.   :. .  . :  :  .:    : ::    
CCDS31             MMETRKPAERLALPYSLRTAPLGVPGTLPGLPRRDPLRVAL-RL----
                           10        20        30        40        

               70         80        90       100       110         
pF1KB9 DSLILGNYSEPCPFSFP-MPYPNYRGCEYSYGPAFTRKRNERERQRVKCVNEGYAQLRHH
       :.         :  ..  .: :     . .. ::: :::::::::::.:::::::.:: :
CCDS31 DAACWEWARSGCARGWQYLPVP----LDSAFEPAFLRKRNERERQRVRCVNEGYARLRDH
            50        60            70        80        90         

     120       130       140       150       160       170         
pF1KB9 LPEEYLEKRLSKVETLRAAIKYINYLQSLLYPDKAETKNNPGKVSSMIATTSHHADPMFR
       ::.:  .::::::::::::: ::..:: ::                              
CCDS31 LPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEGAAGAVPQRRAECNSDGESKAS
     100       110       120       130       140       150         




181 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:28:37 2016 done: Fri Nov  4 17:28:37 2016
 Total Scan time:  2.010 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]