FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9584, 270 aa
  1>>>pF1KB9584 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6204+/-0.00095; mu= 2.6351+/- 0.058
 mean_var=257.4546+/-53.306, 0's: 0 Z-trim(114.8): 21  B-trim: 0 in 0/51
 Lambda= 0.079933
 statistics sampled from 15340 (15355) to 15340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.472), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS5195.1 CITED2 gene_id:10370|Hs108|chr6         ( 270) 1944 236.4 1.7e-62
CCDS75530.1 CITED2 gene_id:10370|Hs108|chr6        ( 275) 1944 236.4 1.7e-62


>>CCDS5195.1 CITED2 gene_id:10370|Hs108|chr6              (270 aa)
 initn: 1944 init1: 1944 opt: 1944  Z-score: 1235.7  bits: 236.4 E(32554): 1.7e-62
Smith-Waterman score: 1944; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB9 MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEHIHYGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEHIHYGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQKLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 GNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQLQKLN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSSTPGGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 NQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSSTPGGSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGLDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEMGLDRI
              190       200       210       220       230       240

              250       260       270
pF1KB9 KELPELWLGQNEFDFMTDFVCKQQPSRVSC
       ::::::::::::::::::::::::::::::
CCDS51 KELPELWLGQNEFDFMTDFVCKQQPSRVSC
              250       260       270

>>CCDS75530.1 CITED2 gene_id:10370|Hs108|chr6             (275 aa)
 initn: 1944 init1: 1944 opt: 1944  Z-score: 1235.6  bits: 236.4 E(32554): 1.7e-62
Smith-Waterman score: 1944; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:6-275)

                    10        20        30        40        50     
pF1KB9      MADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEH
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSGLEMADHMMAMNHGRFPDGTNGLHHHPAHRMGMGQFPSPHHHQQQQPQHAFNALMGEH
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 IHYGAGNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IHYGAGNMNATSGIRHAMGPGTVNGGHPPSALAPAARFNNSQFMGPPVASQGGSLPASMQ
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB9 LQKLNNQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LQKLNNQYFNHHPYPHNHYMPDLHPAAGHQMNGTNQHFRDCNPKHSGGSSTPGGSGGSST
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB9 PGGSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PGGSGSSSGGGAGSSNSGGGSGSGNMPASVAHVPAAMLPPNVIDTDFIDEEVLMSLVIEM
              190       200       210       220       230       240

         240       250       260       270
pF1KB9 GLDRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC
       :::::::::::::::::::::::::::::::::::
CCDS75 GLDRIKELPELWLGQNEFDFMTDFVCKQQPSRVSC
              250       260       270     




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:29:39 2016 done: Fri Nov  4 17:29:39 2016
 Total Scan time:  2.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]