FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9585, 345 aa
  1>>>pF1KB9585 345 - 345 aa - 345 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0013+/-0.00089; mu= 0.1504+/- 0.054
 mean_var=377.1321+/-76.909, 0's: 0 Z-trim(118.5): 14  B-trim: 524 in 1/51
 Lambda= 0.066043
 statistics sampled from 19519 (19531) to 19519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.6), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS13429.1 CEBPB gene_id:1051|Hs108|chr20         ( 345) 2394 240.9 1.1e-63


>>CCDS13429.1 CEBPB gene_id:1051|Hs108|chr20              (345 aa)
 initn: 2394 init1: 2394 opt: 2394  Z-score: 1256.6  bits: 240.9 E(32554): 1.1e-63
Smith-Waterman score: 2394; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KB9 MQRLVAWDPACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MQRLVAWDPACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPAD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 AKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQ
              250       260       270       280       290       300

              310       320       330       340     
pF1KB9 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGHC
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGHC
              310       320       330       340     




345 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:30:16 2016 done: Fri Nov  4 17:30:17 2016
 Total Scan time:  2.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]