Result of FASTA (omim) for
pF1KB9586
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9586, 150 aa
1>>>pF1KB9586 150 - 150 aa - 150 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4229+/-0.000278; mu= 10.5279+/- 0.018
mean_var=135.8242+/-26.635, 0's: 0 Z-trim(122.6): 36 B-trim: 0 in 0/53
Lambda= 0.110049
statistics sampled from 40839 (40879) to 40839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.479), width: 16
Scan time: 4.900
The best scores are: opt bits E(85289)
NP_001797 (OMIM: 138972) CCAAT/enhancer-binding pr ( 150) 953 160.9 7.2e-40
NP_001239225 (OMIM: 138972) CCAAT/enhancer-binding ( 150) 953 160.9 7.2e-40
NP_001272808 (OMIM: 189965) CCAAT/enhancer-binding ( 147) 261 51.0 8.4e-07
NP_001272807 (OMIM: 189965) CCAAT/enhancer-binding ( 322) 261 51.3 1.5e-06
NP_005185 (OMIM: 189965) CCAAT/enhancer-binding pr ( 345) 261 51.4 1.5e-06
NP_005186 (OMIM: 116898) CCAAT/enhancer-binding pr ( 269) 240 47.9 1.3e-05
NP_001272758 (OMIM: 116897,601626) CCAAT/enhancer- ( 239) 233 46.8 2.6e-05
NP_001274364 (OMIM: 116897,601626) CCAAT/enhancer- ( 344) 233 46.9 3.3e-05
NP_004355 (OMIM: 116897,601626) CCAAT/enhancer-bin ( 358) 233 46.9 3.4e-05
NP_001274353 (OMIM: 116897,601626) CCAAT/enhancer- ( 393) 233 47.0 3.6e-05
NP_001796 (OMIM: 245480,600749) CCAAT/enhancer-bin ( 281) 228 46.0 5e-05
>>NP_001797 (OMIM: 138972) CCAAT/enhancer-binding protei (150 aa)
initn: 953 init1: 953 opt: 953 Z-score: 836.8 bits: 160.9 E(85289): 7.2e-40
Smith-Waterman score: 953; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQLVPAGPGGGGKAVAPSKQSKKSSPMDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQLVPAGPGGGGKAVAPSKQSKKSSPMDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 NSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKD
70 80 90 100 110 120
130 140 150
pF1KB9 LFLEHAHNLADNVQSISTENTTADGDNAGQ
::::::::::::::::::::::::::::::
NP_001 LFLEHAHNLADNVQSISTENTTADGDNAGQ
130 140 150
>>NP_001239225 (OMIM: 138972) CCAAT/enhancer-binding pro (150 aa)
initn: 953 init1: 953 opt: 953 Z-score: 836.8 bits: 160.9 E(85289): 7.2e-40
Smith-Waterman score: 953; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQLVPAGPGGGGKAVAPSKQSKKSSPMDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQLVPAGPGGGGKAVAPSKQSKKSSPMDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 NSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKD
70 80 90 100 110 120
130 140 150
pF1KB9 LFLEHAHNLADNVQSISTENTTADGDNAGQ
::::::::::::::::::::::::::::::
NP_001 LFLEHAHNLADNVQSISTENTTADGDNAGQ
130 140 150
>>NP_001272808 (OMIM: 189965) CCAAT/enhancer-binding pro (147 aa)
initn: 253 init1: 239 opt: 261 Z-score: 243.1 bits: 51.0 E(85289): 8.4e-07
Smith-Waterman score: 261; 39.3% identity (68.0% similar) in 122 aa overlap (4-122:13-133)
10 20 30 40
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQLVPAGPGG--GGKAVAPS
.. : : .: ... : . : . : : . .: : :::
NP_001 MAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPS-PADAKAPPTACYAGAAPAPS
10 20 30 40 50
50 60 70 80 90 100
pF1KB9 K-QSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKI
. .:: .. .:..::::. ::::::.::.::: :.:.. .: ..: .: :::::. :.
NP_001 QVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV
60 70 80 90 100 110
110 120 130 140 150
pF1KB9 KLLTKELSVLKDLFLEHAHNLADNVQSISTENTTADGDNAGQ
. :..:::.:..::
NP_001 EQLSRELSTLRNLFKQLPEPLLASSGHC
120 130 140
>>NP_001272807 (OMIM: 189965) CCAAT/enhancer-binding pro (322 aa)
initn: 308 init1: 239 opt: 261 Z-score: 238.8 bits: 51.3 E(85289): 1.5e-06
Smith-Waterman score: 261; 39.3% identity (68.0% similar) in 122 aa overlap (4-122:188-308)
10 20 30
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQ
.. : : .: ... : . :
NP_001 PADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPS-PA
160 170 180 190 200 210
40 50 60 70 80 90
pF1KB9 LVPAGPGG--GGKAVAPSK-QSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDT
. : : . .: : :::. .:: .. .:..::::. ::::::.::.::: :.:.. .:
NP_001 DAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLET
220 230 240 250 260 270
100 110 120 130 140 150
pF1KB9 LQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHAHNLADNVQSISTENTTADGDNAGQ
..: .: :::::. :.. :..:::.:..::
NP_001 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGHC
280 290 300 310 320
>>NP_005185 (OMIM: 189965) CCAAT/enhancer-binding protei (345 aa)
initn: 308 init1: 239 opt: 261 Z-score: 238.4 bits: 51.4 E(85289): 1.5e-06
Smith-Waterman score: 261; 39.3% identity (68.0% similar) in 122 aa overlap (4-122:211-331)
10 20 30
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQ
.. : : .: ... : . :
NP_005 PADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPS-PA
190 200 210 220 230
40 50 60 70 80 90
pF1KB9 LVPAGPGG--GGKAVAPSK-QSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDT
. : : . .: : :::. .:: .. .:..::::. ::::::.::.::: :.:.. .:
NP_005 DAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLET
240 250 260 270 280 290
100 110 120 130 140 150
pF1KB9 LQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHAHNLADNVQSISTENTTADGDNAGQ
..: .: :::::. :.. :..:::.:..::
NP_005 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGHC
300 310 320 330 340
>>NP_005186 (OMIM: 116898) CCAAT/enhancer-binding protei (269 aa)
initn: 281 init1: 219 opt: 240 Z-score: 221.8 bits: 47.9 E(85289): 1.3e-05
Smith-Waterman score: 240; 41.7% identity (71.8% similar) in 103 aa overlap (25-122:151-251)
10 20 30 40 50
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQVPQLVPAGPGGGGKAV-APSKQSK
:.: : .: : : .. . . ::. .
NP_005 REPDWGDGDAPGSLLPAQVAACAQTVVSLAAAG-QPTPPTSPEPPRSSPRQTPAPGPARE
130 140 150 160 170
60 70 80 90 100
pF1KB9 KSS----PMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEENERLEAKIK
::. : ::.: ::::::::::.::.::: :.:.. :. :.. .:. :::.:. ...
NP_005 KSAGKRGP-DRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVE
180 190 200 210 220 230
110 120 130 140 150
pF1KB9 LLTKELSVLKDLFLEHAHNLADNVQSISTENTTADGDNAGQ
::..:. :...:
NP_005 QLTRDLAGLRQFFKQLPSPPFLPAAGTADCR
240 250 260
>>NP_001272758 (OMIM: 116897,601626) CCAAT/enhancer-bind (239 aa)
initn: 239 init1: 208 opt: 233 Z-score: 216.4 bits: 46.8 E(85289): 2.6e-05
Smith-Waterman score: 245; 36.9% identity (69.7% similar) in 122 aa overlap (2-122:111-223)
10 20 30
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQV
. . . . .:.... .. . .:: .
NP_001 HLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLGAA
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB9 -PQLVPAGPGGGGKAVAPSKQSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDT
:.: .: .:.::: ::: .:.::.::: ::::::.::.::: :.::. .:
NP_001 HPDLRASGGSGAGKA-------KKS--VDKNSNEYRVRRERNNIAVRKSRDKAKQRNVET
150 160 170 180 190
100 110 120 130 140 150
pF1KB9 LQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHAHNLADNVQSISTENTTADGDNAGQ
:.: .: .:.::. ... :..::..:. .:
NP_001 QQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA
200 210 220 230
>>NP_001274364 (OMIM: 116897,601626) CCAAT/enhancer-bind (344 aa)
initn: 243 init1: 208 opt: 233 Z-score: 214.4 bits: 46.9 E(85289): 3.3e-05
Smith-Waterman score: 245; 36.9% identity (69.7% similar) in 122 aa overlap (2-122:216-328)
10 20 30
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQV
. . . . .:.... .. . .:: .
NP_001 HLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLGAA
190 200 210 220 230 240
40 50 60 70 80 90
pF1KB9 -PQLVPAGPGGGGKAVAPSKQSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDT
:.: .: .:.::: ::: .:.::.::: ::::::.::.::: :.::. .:
NP_001 HPDLRASGGSGAGKA-------KKS--VDKNSNEYRVRRERNNIAVRKSRDKAKQRNVET
250 260 270 280 290
100 110 120 130 140 150
pF1KB9 LQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHAHNLADNVQSISTENTTADGDNAGQ
:.: .: .:.::. ... :..::..:. .:
NP_001 QQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA
300 310 320 330 340
>>NP_004355 (OMIM: 116897,601626) CCAAT/enhancer-binding (358 aa)
initn: 263 init1: 208 opt: 233 Z-score: 214.2 bits: 46.9 E(85289): 3.4e-05
Smith-Waterman score: 245; 36.9% identity (69.7% similar) in 122 aa overlap (2-122:230-342)
10 20 30
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQV
. . . . .:.... .. . .:: .
NP_004 HLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLGAA
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB9 -PQLVPAGPGGGGKAVAPSKQSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDT
:.: .: .:.::: ::: .:.::.::: ::::::.::.::: :.::. .:
NP_004 HPDLRASGGSGAGKA-------KKS--VDKNSNEYRVRRERNNIAVRKSRDKAKQRNVET
260 270 280 290 300 310
100 110 120 130 140 150
pF1KB9 LQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHAHNLADNVQSISTENTTADGDNAGQ
:.: .: .:.::. ... :..::..:. .:
NP_004 QQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA
320 330 340 350
>>NP_001274353 (OMIM: 116897,601626) CCAAT/enhancer-bind (393 aa)
initn: 243 init1: 208 opt: 233 Z-score: 213.7 bits: 47.0 E(85289): 3.6e-05
Smith-Waterman score: 245; 36.9% identity (69.7% similar) in 122 aa overlap (2-122:265-377)
10 20 30
pF1KB9 MSKISQQNSTPGVNGISVIHTQAHASGLQQV
. . . . .:.... .. . .:: .
NP_001 HLAAPHLQFQIAHCGQTTMHLQPGHPTPPPTPVPSPHPAPALGAAGLPGPGSALKGLGAA
240 250 260 270 280 290
40 50 60 70 80 90
pF1KB9 -PQLVPAGPGGGGKAVAPSKQSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDT
:.: .: .:.::: ::: .:.::.::: ::::::.::.::: :.::. .:
NP_001 HPDLRASGGSGAGKA-------KKS--VDKNSNEYRVRRERNNIAVRKSRDKAKQRNVET
300 310 320 330 340
100 110 120 130 140 150
pF1KB9 LQRVNQLKEENERLEAKIKLLTKELSVLKDLFLEHAHNLADNVQSISTENTTADGDNAGQ
:.: .: .:.::. ... :..::..:. .:
NP_001 QQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNCA
350 360 370 380 390
150 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:30:45 2016 done: Fri Nov 4 17:30:46 2016
Total Scan time: 4.900 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]