FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9587, 236 aa
  1>>>pF1KB9587 236 - 236 aa - 236 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4163+/-0.000604; mu= 6.5065+/- 0.037
 mean_var=140.1337+/-28.238, 0's: 0 Z-trim(117.3): 7  B-trim: 2 in 1/53
 Lambda= 0.108344
 statistics sampled from 18044 (18050) to 18044 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.554), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS12557.1 SERTAD1 gene_id:29950|Hs108|chr19      ( 236) 1570 255.5 2.2e-68


>>CCDS12557.1 SERTAD1 gene_id:29950|Hs108|chr19           (236 aa)
 initn: 1570 init1: 1570 opt: 1570  Z-score: 1341.1  bits: 255.5 E(32554): 2.2e-68
Smith-Waterman score: 1570; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236)

               10        20        30        40        50        60
pF1KB9 MLSKGLKRKREEEEEKEPLAVDSWWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLSKGLKRKREEEEEKEPLAVDSWWLDPGHTAVAQAPPAVASSSLFDLSVLKLHHSLQQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 EPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EPDLRHLVLVVNTLRRIQASMAPAAALPPVPSPPAAPSVADNLLASSDAALSASMASLLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DLSHIEGLSQAPQPLADEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DLSHIEGLSQAPQPLADEGPPGRSIGGAAPSLGALDLLGPATGCLLDDGLEGLFEDIDTS
              130       140       150       160       170       180

              190       200       210       220       230      
pF1KB9 MYDNELWAPASEGLKPGPEDGPGKEEAPELDEAELDYLMDVLVGTQALERPPGPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MYDNELWAPASEGLKPGPEDGPGKEEAPELDEAELDYLMDVLVGTQALERPPGPGR
              190       200       210       220       230      




236 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:31:17 2016 done: Fri Nov  4 17:31:17 2016
 Total Scan time:  2.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]