Result of FASTA (omim) for pF1KB9598
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9598, 478 aa
  1>>>pF1KB9598 478 - 478 aa - 478 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5893+/-0.000393; mu= 1.5717+/- 0.025
 mean_var=343.5209+/-70.586, 0's: 0 Z-trim(123.4): 132  B-trim: 35 in 1/57
 Lambda= 0.069199
 statistics sampled from 42929 (43069) to 42929 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.505), width:  16
 Scan time: 11.290

The best scores are:                                      opt bits E(85289)
NP_036315 (OMIM: 607836,611539) forkhead box prote ( 478) 3213 334.3 4.5e-91
NP_004463 (OMIM: 601091) forkhead box protein D1 [ ( 465)  882 101.6 4.9e-21
NP_004465 (OMIM: 602211) forkhead box protein D2 [ ( 495)  843 97.7 7.7e-20
NP_004464 (OMIM: 241850,602617,616534) forkhead bo ( 373)  707 84.0 7.8e-16
NP_036316 (OMIM: 611084) forkhead box protein D4-l ( 408)  700 83.4 1.3e-15
NP_954586 (OMIM: 611086) forkhead box protein D4-l ( 417)  685 81.9 3.8e-15
NP_954714 (OMIM: 611085) forkhead box protein D4-l ( 416)  683 81.7 4.4e-15
NP_997188 (OMIM: 601092) forkhead box protein D4 [ ( 439)  674 80.8 8.5e-15
NP_005242 (OMIM: 153400,602402) forkhead box prote ( 501)  620 75.5 3.9e-13
NP_036318 (OMIM: 107250,601094,610256) forkhead bo ( 319)  586 71.9   3e-12
NP_001443 (OMIM: 603250) forkhead box protein F2 [ ( 444)  575 70.9 8.1e-12
NP_075555 (OMIM: 110100,605597,608996) forkhead bo ( 376)  564 69.7 1.5e-11
NP_001444 (OMIM: 601090,601631,602482) forkhead bo ( 553)  560 69.5 2.6e-11
NP_005240 (OMIM: 164874,613454) forkhead box prote ( 489)  556 69.1 3.2e-11
NP_710141 (OMIM: 600288) hepatocyte nuclear factor ( 457)  548 68.2 5.3e-11
NP_068556 (OMIM: 600288) hepatocyte nuclear factor ( 463)  548 68.2 5.4e-11
NP_001129121 (OMIM: 612351) forkhead box protein I ( 420)  537 67.1 1.1e-10
NP_001442 (OMIM: 265380,601089) forkhead box prote ( 379)  526 66.0 2.2e-10
NP_004488 (OMIM: 602295) hepatocyte nuclear factor ( 350)  523 65.6 2.5e-10
NP_150285 (OMIM: 612788) forkhead box protein Q1 [ ( 403)  517 65.1 4.2e-10
NP_004109 (OMIM: 602939) forkhead box protein S1 [ ( 330)  514 64.7 4.5e-10
NP_005241 (OMIM: 603252) forkhead box protein L1 [ ( 345)  508 64.1   7e-10
NP_036320 (OMIM: 274600,600791,601093) forkhead bo ( 378)  492 62.6 2.3e-09
XP_016876735 (OMIM: 602294) PREDICTED: hepatocyte  ( 439)  489 62.3 3.1e-09
NP_004487 (OMIM: 602294) hepatocyte nuclear factor ( 472)  489 62.4 3.2e-09
NP_001445 (OMIM: 602291) forkhead box protein J1 [ ( 421)  407 54.1 8.7e-07
NP_004505 (OMIM: 147685) forkhead box protein K2 [ ( 660)  398 53.4 2.2e-06
XP_011513493 (OMIM: 616302) PREDICTED: forkhead bo ( 570)  376 51.2 9.1e-06
NP_001032242 (OMIM: 616302) forkhead box protein K ( 733)  376 51.3 1.1e-05
XP_016856182 (OMIM: 616035) PREDICTED: forkhead bo ( 573)  367 50.3 1.7e-05
NP_001185781 (OMIM: 616035) forkhead box protein J ( 588)  367 50.3 1.7e-05
XP_006710522 (OMIM: 616035) PREDICTED: forkhead bo ( 596)  367 50.3 1.7e-05
XP_006710521 (OMIM: 616035) PREDICTED: forkhead bo ( 607)  361 49.7 2.7e-05
XP_011539328 (OMIM: 616035) PREDICTED: forkhead bo ( 622)  361 49.7 2.7e-05
NP_001185780 (OMIM: 616035) forkhead box protein J ( 622)  361 49.7 2.7e-05
NP_001185779 (OMIM: 616035) forkhead box protein J ( 622)  361 49.7 2.7e-05
NP_055762 (OMIM: 616035) forkhead box protein J3 i ( 622)  361 49.7 2.7e-05
XP_005270689 (OMIM: 616035) PREDICTED: forkhead bo ( 630)  361 49.7 2.7e-05
NP_001278210 (OMIM: 611457) forkhead box protein O ( 559)  335 47.1 0.00015
NP_658982 (OMIM: 274600,600791,601093) forkhead bo ( 283)  317 44.9 0.00034
NP_003914 (OMIM: 603621) forkhead box protein H1 [ ( 365)  309 44.3  0.0007
XP_011519236 (OMIM: 602341) PREDICTED: forkhead bo ( 433)  299 43.4  0.0016
NP_001230018 (OMIM: 602341) forkhead box protein M ( 747)  287 42.4  0.0052
NP_973732 (OMIM: 602341) forkhead box protein M1 i ( 748)  287 42.4  0.0052
NP_001230017 (OMIM: 602341) forkhead box protein M ( 748)  286 42.3  0.0055
XP_011519233 (OMIM: 602341) PREDICTED: forkhead bo ( 749)  286 42.3  0.0055
XP_016859447 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  279 41.4  0.0062
NP_002149 (OMIM: 143089) forkhead box protein N2 [ ( 431)  279 41.4  0.0062
XP_006712065 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  279 41.4  0.0062
XP_005264339 (OMIM: 143089) PREDICTED: forkhead bo ( 431)  279 41.4  0.0062


>>NP_036315 (OMIM: 607836,611539) forkhead box protein D  (478 aa)
 initn: 3213 init1: 3213 opt: 3213  Z-score: 1756.1  bits: 334.3 E(85289): 4.5e-91
Smith-Waterman score: 3213; 100.0% identity (100.0% similar) in 478 aa overlap (1-478:1-478)

               10        20        30        40        50        60
pF1KB9 MTLSGGGSASDMSGQTVLTAEDVDIDVVGEGDDGLEEKDSDAGCDSPAGPPELRLDEADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MTLSGGGSASDMSGQTVLTAEDVDIDVVGEGDDGLEEKDSDAGCDSPAGPPELRLDEADE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VPPAAPHHGQPQPPHQQPLTLPKEAAGAGAGPGGDVGAPEADGCKGGVGGEEGGASGGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VPPAAPHHGQPQPPHQQPLTLPKEAAGAGAGPGGDVGAPEADGCKGGVGGEEGGASGGGP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GAGSGSAGGLAPSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GAGSGSAGGLAPSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QQEHLREQTALMMQSFGAYSLAAAAGAAGPYGRPYGLHPAAAAGAYSHPAAAAAAAAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QQEHLREQTALMMQSFGAYSLAAAAGAAGPYGRPYGLHPAAAAGAYSHPAAAAAAAAAAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LQYPYALPPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LQYPYALPPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 AGTTASLIKSEPSARPSFSIENIIGGGPAAPGGSAVGAGVAGGTGGSGGGSTAQSFLRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AGTTASLIKSEPSARPSFSIENIIGGGPAAPGGSAVGAGVAGGTGGSGGGSTAQSFLRPP
              370       380       390       400       410       420

              430       440       450       460       470        
pF1KB9 GTVQSAALMATHQPLSLSRTTATIAPILSVPLSGQFLQPAASAAAAAAAAAQAKWPAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GTVQSAALMATHQPLSLSRTTATIAPILSVPLSGQFLQPAASAAAAAAAAAQAKWPAQ
              430       440       450       460       470        

>>NP_004463 (OMIM: 601091) forkhead box protein D1 [Homo  (465 aa)
 initn: 766 init1: 766 opt: 882  Z-score: 498.6  bits: 101.6 E(85289): 4.9e-21
Smith-Waterman score: 1047; 45.7% identity (61.1% similar) in 486 aa overlap (1-447:1-446)

               10        20        30        40        50          
pF1KB9 MTLSGGGSASDMSGQTVLTAEDVDIDVVGEGDDGLEEKDSDAGCDSPAGP----PELRLD
       ::::     :: ::     ::..::::::::.:  .:.. :    . .::    :  :  
NP_004 MTLS--TEMSDASG----LAEETDIDVVGEGEDEEDEEEEDDDEGGGGGPRLAVPAQRRR
                 10            20        30        40        50    

         60        70        80        90       100       110      
pF1KB9 EADEVPPAAPHHGQPQPPHQQPLTLPKEAAGAGAGPGGDVGAPEADGCKGGVGGEEGGAS
       .          .   .   .. . :   :.:. : ::    :: : .  :: ::  ::..
NP_004 RRRSYAGEDELEDLEEEEDDDDILLAPPAGGSPAPPG---PAPAAGAGAGGGGG--GGGA
           60        70        80        90          100           

        120       130       140       150       160       170      
pF1KB9 GGGPGAGSGSAGGLAPSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFP
       ::: .::::.         :: ::::::::::::::::::::.:.:::: ::::::.:::
NP_004 GGGGSAGSGA---------KNPLVKPPYSYIALITMAILQSPKKRLTLSEICEFISGRFP
     110                120       130       140       150       160

        180       190       200       210       220       230      
pF1KB9 YYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR
       :::::::::::::::::::::::::::::::::::::::::::.: ::::::::::::::
NP_004 YYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGSFLRRRKR
              170       180       190       200       210       220

        240         250       260                        270       
pF1KB9 FKRHQ--QEHLREQTALMMQSFGAYSLAA--AAGAA---------------GPYGRPYGL
       :::.     .     .:.... :: . :.  ::.::               ::::  :::
NP_004 FKRQPLLPPNAAAAESLLLRGAGAAGGAGDPAAAAALFPPAPPPPPHAYGYGPYGCGYGL
              230       240       250       260       270       280

       280       290       300       310       320       330       
pF1KB9 HPAAAAGAYSHPAAAAAAAAAAALQYPYALPPVAPVLPPAVPLLPSGELGRKAAAFGSQL
       .    :   .  :::::::::::. .:.. ::     ::  :   ..::.:  .::: . 
NP_004 QLPPYAPPSALFAAAAAAAAAAAF-HPHS-PP-----PPPPPHGAAAELAR--TAFGYRP
              290       300         310            320         330 

        340       350       360       370       380         390    
pF1KB9 GP-GLQLQLNSLGAAAAAAGTAGAAGTTASLIKSEPSARPSFSIENIIGG--GPAAPGGS
        : :  :  . : :.:: ::  ::..           ::  ::::.::::  :::: ...
NP_004 HPLGAALP-GPLPASAAKAGGPGASAL----------ARSPFSIESIIGGSLGPAAAAAA
              340       350                 360       370       380

          400                    410       420       430       440 
pF1KB9 AVGAGVAG-------------GTGGSGGGSTAQSFLRPPGTVQSAALMATHQPLSLSRTT
       :. :..:.             . :.:::: .::. . : ...  . . :.    :   ..
NP_004 AAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAALTRSLVAAAAAAASSVSSS
              390       400       410       420       430       440

             450       460       470        
pF1KB9 ATIAPILSVPLSGQFLQPAASAAAAAAAAAQAKWPAQ
       :... .                               
NP_004 AALGTLHQGTALSSVENFTARISNC            
              450       460                 

>>NP_004465 (OMIM: 602211) forkhead box protein D2 [Homo  (495 aa)
 initn: 913 init1: 740 opt: 843  Z-score: 477.2  bits: 97.7 E(85289): 7.7e-20
Smith-Waterman score: 975; 42.7% identity (57.5% similar) in 485 aa overlap (10-434:12-472)

                 10        20        30        40        50        
pF1KB9   MTLSGGGSASDMSGQTVLTAEDVDIDVVGEGDDGLEEKDSDAGCDSPAGPPELRLDEA
                  :. :. ..:.  :.:::::: :. : :         . .::   :    
NP_004 MTLGSCCCEIMSSESSPAALSEADADIDVVGGGSGGGE-------LPARSGPRAPR----
               10        20        30               40             

       60        70        80        90             100       110  
pF1KB9 DEVPPAAPHHGQPQPPHQQPLTLPKEAAGAGAGPGGDV------GAPEADGCKGGVGGEE
       : .:     ::.  : ..    : ..   .:.   :.       ::  : :  :  ..  
NP_004 DVLP-----HGHEPPAEEAEADLAEDEEESGGCSDGEPRALASRGAAAAAGSPGPGAAAA
      50             60        70        80        90       100    

            120       130       140       150       160       170  
pF1KB9 GGASGGGPGAGSGSAGGLAPSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFIS
        ::.: :::  ::.:.  .:      ::::::::::::::::::::.:.:::: ::::::
NP_004 RGAAGPGPGPPSGGAATRSP------LVKPPYSYIALITMAILQSPKKRLTLSEICEFIS
          110       120             130       140       150        

            180       190       200       210       220       230  
pF1KB9 NRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLR
       .::::::::::::::::::::::::::::::::::::::::::::::.: ::::::::::
NP_004 GRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGSFLR
      160       170       180       190       200       210        

            240           250       260            270             
pF1KB9 RRKRFKRHQ----QEHLREQTALMMQSFGAYSLAAAA-----GAAGPYGRPYGLH-----
       :::::::.     . : . .  :.... .: .   .:     .: : ::  :::      
NP_004 RRKRFKRQPLPPPHPHPHPHPELLLRGGAAAAGDPGAFLPGFAAYGAYGYGYGLALPAYG
      220       230       240       250       260       270        

         280       290       300       310       320            330
pF1KB9 ---PAAAAGAYSHPAAAAAAAAAAALQYPYALPPVAPVLPPAVPLLPS-----GELGRKA
          :. :   . :: : : ::::::     ..::   . ::  :   :     :     :
NP_004 APPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAGSAPAPA
      280       290       300       310       320       330        

              340              350       360               370     
pF1KB9 AAFGSQLGPG-------LQLQLNSLGAAAAAAGTAGAAGTTASL--------IKSEPSA-
        : ::  :::       :  .:.   :  ::. .  ::::.:.:        .:.. .. 
NP_004 PASGSGPGPGPAGLPAFLGAELGCAKAFYAASLSPPAAGTAAGLPTALLRQGLKTDAGGG
      340       350       360       370       380       390        

                    380         390       400           410        
pF1KB9 ----------RPSFSIENIIG--GGPAAPGGSAVGAGVAG----GTGGSGGGSTAQSFLR
                 ::::::..:.:  :: ::: :.  : :  :    ...: :: . . ..: 
NP_004 AGGGGAGAGQRPSFSIDHIMGHGGGGAAPPGA--GEGSPGPPFAAAAGPGGQAQVLAMLT
      400       410       420       430         440       450      

      420       430       440       450       460       470        
pF1KB9 PPGTVQSAALMATHQPLSLSRTTATIAPILSVPLSGQFLQPAASAAAAAAAAAQAKWPAQ
        :. .  :. .   .:                                            
NP_004 APALAPVAGHIRLSHPGDALLSSGSRFASKVAGLSGCHF                     
        460       470       480       490                          

>>NP_004464 (OMIM: 241850,602617,616534) forkhead box pr  (373 aa)
 initn: 687 init1: 574 opt: 707  Z-score: 405.3  bits: 84.0 E(85289): 7.8e-16
Smith-Waterman score: 712; 44.1% identity (63.2% similar) in 345 aa overlap (112-434:24-342)

              90       100       110       120        130       140
pF1KB9 PKEAAGAGAGPGGDVGAPEADGCKGGVGGEEGGASGGGPGAGSG-SAGGLAPSKPKNSLV
                                     : .:..: :: ..: .:::   ..: .   
NP_004        MTAESGPPPPQPEVLATVKEERGETAAGAGVPGEATGRGAGGRRRKRPLQRG-
                      10        20        30        40        50   

              150       160       170       180       190       200
pF1KB9 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV
       ::::::::::.::: ..:...:::.:: .::..:::.::..   :::::::::.:::::.
NP_004 KPPYSYIALIAMAIAHAPERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCFL
             60        70        80        90       100       110  

              210       220       230       240       250       260
pF1KB9 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRHQQEHLREQTALMMQSFGAYS
       ::::: : :::::::.:::..::::..:::::::::::: .   :    : : .. .: .
NP_004 KIPREAGRPGKGNYWALDPNAEDMFESGSFLRRRKRFKRSD---LSTYPAYMHDAAAAAA
            120       130       140       150          160         

                     270       280       290       300       310   
pF1KB9 LAAAAGAAG-------PYGRPYGLHPAAAAGAYSHPAAAAAAAAAAALQYPYALPPVAPV
        ::::.::.       : .::   .:.:. ..:. :. ::       . :: : :    :
NP_004 AAAAAAAAAAIFPGAVPAARPP--YPGAVYAGYAPPSLAA----PPPVYYPAASPGPCRV
     170       180       190         200           210       220   

             320       330       340       350       360       370 
pF1KB9 --LPPAVPLLPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGAAGTTASLIKSE
         : :  :: :  :::   .      ::: .  . : :: :...:   :. : :     .
NP_004 FGLVPERPLSP--ELGPAPS------GPGGSCAFASAGAPATTTGYQPAGCTGA-----R
           230         240             250       260            270

             380       390           400            410            
pF1KB9 PSARPSFSIENIIGGGPAAP--GGSAV--GAGVAGG-----TGGSGGG--STAQSFLRP-
       : : ::       :   : :  .:::.  .::  .:     .:::.::  .:.. . :  
NP_004 P-ANPSAYAAAYAGPDGAYPQGAGSAIFAAAGRLAGPASPPAGGSSGGVETTVDFYGRTS
               280       290       300       310       320         

     420       430       440       450       460       470        
pF1KB9 PGTVQSAALMATHQPLSLSRTTATIAPILSVPLSGQFLQPAASAAAAAAAAAQAKWPAQ
       ::  : .:: : ..:                                            
NP_004 PG--QFGALGACYNPGGQLGGASAGAYHARHAAAYPGGIDRFVSAM             
     330         340       350       360       370                

>>NP_036316 (OMIM: 611084) forkhead box protein D4-like   (408 aa)
 initn: 754 init1: 660 opt: 700  Z-score: 401.1  bits: 83.4 E(85289): 1.3e-15
Smith-Waterman score: 750; 45.2% identity (62.5% similar) in 347 aa overlap (106-410:65-405)

          80        90       100       110       120         130   
pF1KB9 QQPLTLPKEAAGAGAGPGGDVGAPEADGCKGGVGGEEGGASGGGPGAGS--GSAGGLAP-
                                     :::.  .    ::::.  :  :.     : 
NP_036 DEDEVEDEEEEASQKFLEQSLQPGLQVARWGGVALPREHIEGGGPSDPSEFGTEFRAPPR
           40        50        60        70        80        90    

                140       150       160       170       180        
pF1KB9 ----SKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNS
           :.   . .::::::::::::::::::.:.::::::: :::.::::::.::::::::
NP_036 SAAASEDARQPAKPPYSYIALITMAILQSPHKRLTLSGICAFISGRFPYYRRKFPAWQNS
          100       110       120       130       140       150    

      190       200       210       220       230       240        
pF1KB9 IRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRHQQE---HL
       :::::::::::::::::::.::::.::.::: :.:::::::::::::::::::     ::
NP_036 IRHNLSLNDCFVKIPREPGHPGKGTYWSLDPASQDMFDNGSFLRRRKRFKRHQLTPGAHL
          160       170       180       190       200       210    

                250           260           270        280         
pF1KB9 RE-------QTALMMQS----FGAYSLAAAAGAA----GPYGRPYGL-HPAAAAGAY-SH
        .       ..::        .:: .:   . .:    .:  :::.: ::        : 
NP_036 PHPFPLPAAHAALHNPRPGPLLGAPALPQPVPGAYPNTAPGRRPYALLHPHPPRYLLLSA
          220       230       240       250       260       270    

      290       300       310       320       330       340        
pF1KB9 PAAAAAAAAAAALQYPYALPPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPG-LQLQLNS
       :: :.:   : . .   : : . ::: :..   :  : :.   ...:  : : ......:
NP_036 PAYAGAPKKAEGAD--LATPGTLPVLQPSLGPQP-WEEGK---GLASPPGGGCISFSIES
          280         290       300        310          320        

       350       360       370        380       390                
pF1KB9 LGAAAAAAGTAGAAGTTASLIKSEPS-ARPSFSIENIIGGGPAAPGG--------SAVGA
       .  .. .:::..: . . .  .  :   :::   .:. . . :. ::        .. ::
NP_036 IMQGVRGAGTGAAQSLSPTAWSYCPLLQRPSSLSDNFAATAAASGGGLRQRLRSHQGRGA
      330       340       350       360       370       380        

      400            410       420       430       440       450   
pF1KB9 GVA-----GGTGGSGGGSTAQSFLRPPGTVQSAALMATHQPLSLSRTTATIAPILSVPLS
       : :     :... ::::                                           
NP_036 GRAPVGRVGAAAVSGGGRGL                                        
      390       400                                                

>>NP_954586 (OMIM: 611086) forkhead box protein D4-like   (417 aa)
 initn: 734 init1: 666 opt: 685  Z-score: 392.9  bits: 81.9 E(85289): 3.8e-15
Smith-Waterman score: 700; 48.5% identity (61.2% similar) in 299 aa overlap (38-314:18-303)

        10        20        30        40        50        60       
pF1KB9 SASDMSGQTVLTAEDVDIDVVGEGDDGLEEKDSDAGCDSPAGPPELRLDEADEVPPAAPH
                                     .::: : :   :  ..  .: ::      .
NP_954              MNLPRAERLRSTPQRSLRDSD-GED---GKIDVLGEEEDEDEVEDEE
                            10        20            30        40   

        70        80        90       100       110       120       
pF1KB9 HGQPQPPHQQPLTLPKEAAGAGAGPGGDVGAPEADGCKGGVGGEEGGASGGGPGAGSGSA
       ..  :   .: :  :    :  ..  : :. :. .  .:: :  . .  :    :   ::
NP_954 EAASQQFLEQSLQ-P----GLQVARWGGVALPR-EHIEGGGGPSDPSEFGTKFRAPPRSA
            50             60        70         80        90       

       130       140       150       160       170       180       
pF1KB9 GGLAPSKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQN
          : :.   . .::::::::::::::::.:.:.::::::: :::.::::::.:::::::
NP_954 ---AASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFISGRFPYYRRKFPAWQN
          100       110       120       130       140       150    

       190       200       210       220       230       240       
pF1KB9 SIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRHQQE---H
       ::::::::::::::::::::.:::::::.::: :.:::::::::::::::::::     :
NP_954 SIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGSFLRRRKRFKRHQLTPGAH
          160       170       180       190       200       210    

                 250       260               270        280        
pF1KB9 LRE-------QTALMMQSFGAYSLAAAA-----GA---AGPYGRPYGL-HPAAAAGAY-S
       : .       ..::     :    : :      ::   ..:  :::.: ::        :
NP_954 LPHPFPLPAAHAALHNPRPGPLLGAPAPPQPVPGAYPNTAPGRRPYALLHPHPLRYLLLS
          220       230       240       250       260       270    

       290         300       310       320       330       340     
pF1KB9 HPAAAAAA--AAAAALQYPYALPPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPGLQLQL
        :. :.:   : .:::  :  .:  .: :                               
NP_954 APVYAGAPKKAEGAALATPAPFPCCSPHLVLSLGRRARVWRRHREADASLSALRVLCKGS
          280       290       300       310       320       330    

>>NP_954714 (OMIM: 611085) forkhead box protein D4-like   (416 aa)
 initn: 724 init1: 666 opt: 683  Z-score: 391.8  bits: 81.7 E(85289): 4.4e-15
Smith-Waterman score: 693; 54.7% identity (64.9% similar) in 225 aa overlap (106-322:65-265)

          80        90       100        110       120         130  
pF1KB9 QQPLTLPKEAAGAGAGPGGDVGAPEADGCKGGVG-GEEGGASGGGPGAGS--GSAGGLAP
                                     :::.  .:   .::::.  :  :.     :
NP_954 DEDEVEDEEEEARQQFLEQSLQPGLQVARWGGVALPREHIEGGGGPSDPSEFGTKFRAPP
           40        50        60        70        80        90    

                 140       150       160       170       180       
pF1KB9 -----SKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQN
            :.   . .::::::::::::::::.:.:.::::::: :::.::::::.:::::::
NP_954 RSAAASEDARQPAKPPYSYIALITMAILQNPHKRLTLSGICAFISGRFPYYRRKFPAWQN
          100       110       120       130       140       150    

       190       200       210       220       230       240       
pF1KB9 SIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRHQQEHLRE
       ::::::::::::::::::::.:::::::.::: :.:::::::::::::::::::      
NP_954 SIRHNLSLNDCFVKIPREPGHPGKGNYWSLDPASQDMFDNGSFLRRRKRFKRHQL-----
          160       170       180       190       200              

       250       260       270       280       290       300       
pF1KB9 QTALMMQSFGAYSLAAAAGAAGPYGRPYGLHPAAAAGAYSHPAAAAAAAAAAALQYPYAL
                       . ::  :.  :. :  : ::    ::.   .: :      : : 
NP_954 ----------------TPGAHLPH--PFPLPAAHAALHNPHPGPLLGAPAPPQ-PVPGAY
                     210         220       230       240        250

       310       320       330       340       350       360       
pF1KB9 PPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGAAGTTASL
       : .::   : . : :                                             
NP_954 PNTAPGRRPYALLHPHPLRYLLLSARVYAGAPKKAEGADLATPAPFPCCSPHLVLSLGRR
              260       270       280       290       300       310

>>NP_997188 (OMIM: 601092) forkhead box protein D4 [Homo  (439 aa)
 initn: 725 init1: 656 opt: 674  Z-score: 386.6  bits: 80.8 E(85289): 8.5e-15
Smith-Waterman score: 695; 54.8% identity (64.9% similar) in 239 aa overlap (106-314:61-299)

          80        90       100        110       120         130  
pF1KB9 QQPLTLPKEAAGAGAGPGGDVGAPEADGCKGGVG-GEEGGASGGGPGAGS--GSAGGLAP
                                     :::.  .:   .::::.  :  :.     :
NP_997 GEEEDEDEEEAASQQFLEQSLQPGLQVARWGGVALPREHIEGGGGPSDPSEFGTEFRAPP
               40        50        60        70        80        90

                 140       150       160       170       180       
pF1KB9 -----SKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQN
            :.   . .::: ::::::::::::::.:.::::::: :::.::::::.:::::::
NP_997 RSAAASEDARQPAKPPSSYIALITMAILQSPHKRLTLSGICAFISDRFPYYRRKFPAWQN
              100       110       120       130       140       150

       190       200       210       220       230       240       
pF1KB9 SIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRHQQE---H
       :::::::::::::::::::: :::::::.::: :.:::::::::::::::.:::     :
NP_997 SIRHNLSLNDCFVKIPREPGRPGKGNYWSLDPASQDMFDNGSFLRRRKRFQRHQPTPGAH
              160       170       180       190       200       210

                 250       260               270        280        
pF1KB9 LRE-------QTALMMQSFGAYSLAAAA-----GA---AGPYGRPYGL-HPAAAAGAY-S
       : .       ..::     :    : :      ::   .::  :::.: ::        :
NP_997 LPHPFPLPAAHAALHNPRPGPLLGAPAPPQPVPGAYPNTGPGRRPYALLHPHPPRYLLLS
              220       230       240       250       260       270

       290         300       310       320       330       340     
pF1KB9 HPAAAAAA--AAAAALQYPYALPPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPGLQLQL
        :: :.:   : .: :  :  .:  .: :                               
NP_997 APAYAGAPKKAEGADLATPAPFPCCSPHLVLSLGRRARVWRRHREADASLSALRVSCKGS
              280       290       300       310       320       330

>>NP_005242 (OMIM: 153400,602402) forkhead box protein C  (501 aa)
 initn: 633 init1: 546 opt: 620  Z-score: 356.8  bits: 75.5 E(85289): 3.9e-13
Smith-Waterman score: 636; 41.1% identity (60.5% similar) in 309 aa overlap (101-402:27-295)

               80        90       100       110       120       130
pF1KB9 PQPPHQQPLTLPKEAAGAGAGPGGDVGAPEADGCKGGVGGEEGGASGGGPGAGSGSAGGL
                                     : :  ::...  :  ::     ..: . . 
NP_005     MQARYSVSDPNALGVVPYLSEQNYYRAAGSYGGMASPMGVYSGHPEQYSAGMGRSY
                   10        20        30        40        50      

                    140       150       160       170       180    
pF1KB9 AP------SKPKNSLVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPA
       ::      . ::. :::::::::::::::: ..:.::.::.:: .:: .:::.:::.  .
NP_005 APYHHHQPAAPKD-LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQG
         60         70        80        90       100       110     

          190       200       210       220       230       240    
pF1KB9 WQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRHQQEH
       ::::::::::::.::::.::.  .::::.::::::.: .::.::::::::.:::...  .
NP_005 WQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVSK
         120       130       140       150       160       170     

          250       260       270       280       290       300    
pF1KB9 LREQTALMMQSFGAYSLAAAAGAAGPYGRPYGLHPAAAAGAYSHPAAAAAAAAAAALQYP
        .:. : . .               :   :    :::. ::   ::.   : :    .  
NP_005 EKEERAHLKE---------------P---P----PAASKGA---PATPHLADAPKEAEKK
         180                             190          200       210

          310       320       330       340       350       360    
pF1KB9 YALPPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGAAGTT
        ..   :    ::.:.. . :           :.:   :: .  .::.. ::.    :. 
NP_005 VVIKSEAA--SPALPVITKVET----------LSPESALQGSPRSAASTPAGSPD--GSL
                220       230                 240       250        

          370       380       390        400       410       420   
pF1KB9 ASLIKSEPSARPSFSIENIIGGGPAAPGGS-AVGAGVAGGTGGSGGGSTAQSFLRPPGTV
            . :.. :.::.:::.    . :::  . ::: ::                     
NP_005 PEHHAAAPNGLPGFSVENIMTLRTSPPGGELSPGAGRAGLVVPPLALPYAAAPPAAYGQP
        260       270       280       290       300       310      

           430       440       450       460       470             
pF1KB9 QSAALMATHQPLSLSRTTATIAPILSVPLSGQFLQPAASAAAAAAAAAQAKWPAQ     
                                                                   
NP_005 CAQGLEAGAAGGYQCSMRAMSLYTGAERPAHMCVPPALDEALSDHPSGPTSPLSALNLAA
        320       330       340       350       360       370      

>>NP_036318 (OMIM: 107250,601094,610256) forkhead box pr  (319 aa)
 initn: 612 init1: 537 opt: 586  Z-score: 340.8  bits: 71.9 E(85289): 3e-12
Smith-Waterman score: 614; 42.3% identity (56.1% similar) in 319 aa overlap (58-356:5-297)

        30        40        50        60        70        80       
pF1KB9 VGEGDDGLEEKDSDAGCDSPAGPPELRLDEADEVPPAAPHHGQPQPPHQQPLTLPKEAAG
                                     .:  ::::   : :  :   : . :  .  
NP_036                           MAGRSDMDPPAA-FSGFPALPAVAP-SGPPPSPL
                                         10         20         30  

        90       100       110       120        130       140      
pF1KB9 AGAGPGGDVGAPEADGCKGGVGGEEGGASGGGPGAGSGSAG-GLAPSKPKNSLVKPPYSY
       ::: :: .   ::             .:.: : .: . . : :    .: .   ::::::
NP_036 AGAEPGRE---PEE------------AAAGRGEAAPTPAPGPGRRRRRPLQRG-KPPYSY
             40                       50        60        70       

        150       160       170       180       190       200      
pF1KB9 IALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREP
       ::::.::. ..: ..:::..: .::..:: .::..   :::::::::.:::::::.::::
NP_036 IALIAMALAHAPGRRLTLAAIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCFVKVPREP
         80        90       100       110       120       130      

        210       220       230       240       250       260      
pF1KB9 GNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRHQQEHLREQTALMMQSFGAYSLAAAAG
       ::::::::::::: . ::::::::::::::::: .       .      :     : : :
NP_036 GNPGKGNYWTLDPAAADMFDNGSFLRRRKRFKRAELPAHAAAAPGPPLPFPYAPYAPAPG
        140       150       160       170       180       190      

                270                 280        290       300       
pF1KB9 --------AAGPYGRP----------YGLHPAAAA-GAYSHPAAAAAAAAAAALQYPYAL
               .:::   :           .:.:  :. ::   :  ::  :::::  .:   
NP_036 PALLVPPPSAGPGPSPPARLFSVDSLVNLQPELAGLGAPEPPCCAAPDAAAAA--FP---
        200       210       220       230       240         250    

       310       320       330       340       350       360       
pF1KB9 PPVAPVLPPAVPLLPSGELGRKAAAFGSQLGPGLQLQLNSLGAAAAAAGTAGAAGTTASL
       : .: . ::    .:. .:   :.  :   ::     : .:.. ::: :           
NP_036 PCAAAASPPLYSQVPD-RLVLPATRPGP--GPLPAEPLLALAGPAAALGPLSPGEAYLRQ
             260        270         280       290       300        

       370       380       390       400       410       420       
pF1KB9 IKSEPSARPSFSIENIIGGGPAAPGGSAVGAGVAGGTGGSGGGSTAQSFLRPPGTVQSAA
                                                                   
NP_036 PGFASGLERYL                                                 
      310                                                          




478 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:34:55 2016 done: Fri Nov  4 17:34:57 2016
 Total Scan time: 11.290 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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