Result of FASTA (ccds) for
pF1KB9619
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9619, 347 aa
1>>>pF1KB9619 347 - 347 aa - 347 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7705+/-0.000879; mu= 3.6549+/- 0.053
mean_var=263.7919+/-53.340, 0's: 0 Z-trim(116.4): 22 B-trim: 0 in 0/51
Lambda= 0.078967
statistics sampled from 16990 (17008) to 16990 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.522), width: 16
Scan time: 3.090
The best scores are: opt bits E(32554)
CCDS12280.1 JUNB gene_id:3726|Hs108|chr19 ( 347) 2336 278.5 5.7e-75
CCDS610.1 JUN gene_id:3725|Hs108|chr1 ( 331) 711 93.4 2.9e-19
CCDS32959.1 JUND gene_id:3727|Hs108|chr19 ( 347) 660 87.6 1.7e-17
>>CCDS12280.1 JUNB gene_id:3726|Hs108|chr19 (347 aa)
initn: 2336 init1: 2336 opt: 2336 Z-score: 1459.5 bits: 278.5 E(32554): 5.7e-75
Smith-Waterman score: 2336; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB9 MCTKMEQPFYHDDSYTATGYGRAPGGLSLHDYKLLKPSLAVNLADPYRSLKAPGARGPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MCTKMEQPFYHDDSYTATGYGRAPGGLSLHDYKLLKPSLAVNLADPYRSLKAPGARGPGP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EGGGGGSYFSGQGSDTGASLKLASSELERLIVPNSNGVITTTPTPPGQYFYPRGGGSGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EGGGGGSYFSGQGSDTGASLKLASSELERLIVPNSNGVITTTPTPPGQYFYPRGGGSGGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AGGAGGGVTEEQEGFADGFVKALDDLHKMNHVTPPNVSLGATGGPPAGPGGVYAGPEPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AGGAGGGVTEEQEGFADGFVKALDDLHKMNHVTPPNVSLGATGGPPAGPGGVYAGPEPPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VYTNLSSYSPASASSGGAGAAVGTGSSYPTTTISYLPHAPPFAGGHPAQLGLGRGASTFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VYTNLSSYSPASASSGGAGAAVGTGSSYPTTTISYLPHAPPFAGGHPAQLGLGRGASTFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EEPQTVPEARSRDATPPVSPINMEDQERIKVERKRLRNRLAATKCRKRKLERIARLEDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EEPQTVPEARSRDATPPVSPINMEDQERIKVERKRLRNRLAATKCRKRKLERIARLEDKV
250 260 270 280 290 300
310 320 330 340
pF1KB9 KTLKAENAGLSSTAGLLREQVAQLKQKVMTHVSNGCQLLLGVKGHAF
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KTLKAENAGLSSTAGLLREQVAQLKQKVMTHVSNGCQLLLGVKGHAF
310 320 330 340
>>CCDS610.1 JUN gene_id:3725|Hs108|chr1 (331 aa)
initn: 876 init1: 454 opt: 711 Z-score: 459.2 bits: 93.4 E(32554): 2.9e-19
Smith-Waterman score: 859; 47.7% identity (67.9% similar) in 365 aa overlap (1-347:1-331)
10 20 30 40 50 60
pF1KB9 MCTKMEQPFYHDDSYTATGYGRAPGGLSLHDYKLLKPSLAVNLADPYRSLKAPGARGPGP
: .::: :: ::. .:. : . . :.:: :...::::: ::: : :. .
CCDS61 MTAKMETTFY-DDALNASFLPSESGPYGYSNPKILKQSMTLNLADPVGSLK-PHLRAKNS
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 EGGGGGSYFSGQGSDTGASLKLASSELERLIVPNSNGVITTTPTPPGQYFYPRGGGSGGG
. ... :.: ::::: ::::::. .::: ::::::: :.. :..
CCDS61 D------LLTSP--DVGL-LKLASPELERLIIQSSNGHITTTPTPT-QFLCPKN------
60 70 80 90 100
130 140 150 160
pF1KB9 AGGAGGGVTEEQEGFADGFVKALDDLHKMNHVTPPNVSL------GATGGPPA-------
::.::::::.:::.:: .::..: : :.:. :: ::
CCDS61 -------VTDEQEGFAEGFVRALAELHSQN--TLPSVTSAAQPVNGAGMVAPAVASVAGG
110 120 130 140 150
170 180 190 200 210 220
pF1KB9 -GPGGVYAG-PEPPPVYTNLSSYSPASASSGGAGAAVGT-GSSYPTTTISYLPHAPPFAG
: :: :. ::::.:::...:.. ::::.. . :. : ..:. . ::
CCDS61 SGSGGFSASLHSEPPVYANLSNFNPGALSSGGGAPSYGAAGLAFPAQ--PQQQQQPPH--
160 170 180 190 200
230 240 250 260 270 280
pF1KB9 GH-PAQLGLGRGA-STFKEEPQTVPEARSRDATPPVSPINMEDQERIKVERKRLRNRLAA
: : :. . . ...::::::::: .. :::.:::.::.:::::.::::.:::.::
CCDS61 -HLPQQMPVQHPRLQALKEEPQTVPEMPGE--TPPLSPIDMESQERIKAERKRMRNRIAA
210 220 230 240 250 260
290 300 310 320 330 340
pF1KB9 TKCRKRKLERIARLEDKVKTLKAENAGLSSTAGLLREQVAQLKQKVMTHVSNGCQLLLGV
.::::::::::::::.:::::::.:. :.:::..:::::::::::::.::..::::.:
CCDS61 SKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNHVNSGCQLMLTQ
270 280 290 300 310 320
pF1KB9 KGHAF
. ..:
CCDS61 QLQTF
330
>>CCDS32959.1 JUND gene_id:3727|Hs108|chr19 (347 aa)
initn: 605 init1: 545 opt: 660 Z-score: 427.6 bits: 87.6 E(32554): 1.7e-17
Smith-Waterman score: 804; 45.0% identity (66.7% similar) in 369 aa overlap (5-339:1-339)
10 20 30 40
pF1KB9 MCTKMEQPFYHDDSYTATGYGRAPGGLSLHDYKLLKP---------------SLAVNLAD
:: ::: :.. .. : : . .: :. . : : .:...:..
CCDS32 METPFYGDEALSGLGGGASGSGGSFASPGRLFPGAPPTAAAGSMMKKDALTLSLSE
10 20 30 40 50
50 60 70 80 90
pF1KB9 PYRS-LKAPGARGPGP-EGGGGGSYFSGQG----SDTGASLKLASSELERLIVPNSNGVI
. :: .: : : .. :. : .: : : ::::: ::::::. .:::..
CCDS32 QVAAALKPAAAPPPTPLRADGAPSAAPPDGLLASPDLGL-LKLASPELERLII-QSNGLV
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB9 TTTPTPPGQYFYPRGGGSGGGAGGAGGGVTEEQEGFADGFVKALDDLHKMNHVTPPNVSL
::::: .:..::. ..: :::: ::.::::::.::::.:.. ...
CCDS32 TTTPTS-SQFLYPKVAAS------------EEQE-FAEGFVKALEDLHKQNQLGA-GAAA
120 130 140 150
160 170 180 190 200
pF1KB9 GATGGPPAGPGGVYAGPEPP------------PVYTNLSSYSPASASSGGAGAAVGTGS-
.:... .::.:. .: :: :::.:::::. ::::.: :...
CCDS32 AAAAAAAGGPSGTATGSAPPGELAPAAAAPEAPVYANLSSYA------GGAGGAGGAATV
160 170 180 190 200 210
210 220 230 240 250 260
pF1KB9 SYPTTTISYLPHAPPFAGGHPAQLGLGRGASTFKEEPQTVPEARSRDATPPVSPINMEDQ
.. . . . : :: : : : : :. .:.::::::.. : .::.:::.:. :
CCDS32 AFAAEPVPFPPPPPPGALGPP------RLAA-LKDEPQTVPDVPSFGESPPLSPIDMDTQ
220 230 240 250 260
270 280 290 300 310 320
pF1KB9 ERIKVERKRLRNRLAATKCRKRKLERIARLEDKVKTLKAENAGLSSTAGLLREQVAQLKQ
::::.::::::::.::.::::::::::.:::.::::::..:. :.:::.:::::::::::
CCDS32 ERIKAERKRLRNRIAASKCRKRKLERISRLEEKVKTLKSQNTELASTASLLREQVAQLKQ
270 280 290 300 310 320
330 340
pF1KB9 KVMTHVSNGCQLLLGVKGHAF
::..::..:::::
CCDS32 KVLSHVNSGCQLLPQHQVPAY
330 340
347 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:45:02 2016 done: Fri Nov 4 17:45:03 2016
Total Scan time: 3.090 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]