FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9628, 331 aa 1>>>pF1KB9628 331 - 331 aa - 331 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.4829+/-0.000285; mu= 8.4277+/- 0.018 mean_var=149.4641+/-31.272, 0's: 0 Z-trim(121.9): 57 B-trim: 1920 in 1/60 Lambda= 0.104907 statistics sampled from 39031 (39093) to 39031 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.458), width: 16 Scan time: 8.950 The best scores are: opt bits E(85289) NP_067014 (OMIM: 611635) neurogenic differentiatio ( 331) 2245 350.6 2.6e-96 NP_002491 (OMIM: 125853,601724,606394) neurogenic ( 356) 1102 177.7 3.3e-44 NP_073565 (OMIM: 611513) neurogenic differentiatio ( 337) 827 136.0 1.1e-31 NP_006151 (OMIM: 601725) neurogenic differentiatio ( 382) 653 109.7 1e-23 NP_006152 (OMIM: 601726) neurogenin-1 [Homo sapien ( 237) 312 58.0 2.4e-08 NP_076924 (OMIM: 606624) neurogenin-2 [Homo sapien ( 272) 267 51.2 3e-06 XP_016871769 (OMIM: 604882,610370) PREDICTED: neur ( 214) 260 50.1 5.1e-06 NP_066279 (OMIM: 604882,610370) neurogenin-3 [Homo ( 214) 260 50.1 5.1e-06 NP_005163 (OMIM: 601461) protein atonal homolog 1 ( 354) 246 48.1 3.3e-05 NP_660161 (OMIM: 609875) protein atonal homolog 7 ( 152) 224 44.5 0.00017 NP_542173 (OMIM: 609331) class E basic helix-loop- ( 241) 227 45.1 0.00018 NP_786923 (OMIM: 609323) oligodendrocyte transcrip ( 272) 212 42.9 0.00095 NP_803238 (OMIM: 608606) class A basic helix-loop- ( 189) 201 41.1 0.0023 NP_005797 (OMIM: 606386) oligodendrocyte transcrip ( 323) 205 41.9 0.0023 XP_005260965 (OMIM: 606386) PREDICTED: oligodendro ( 323) 205 41.9 0.0023 NP_001258822 (OMIM: 200110,209885,227260,607556) t ( 160) 194 40.0 0.0041 NP_476527 (OMIM: 200110,209885,227260,607556) twis ( 160) 194 40.0 0.0041 NP_001099039 (OMIM: 612209) mesogenin-1 [Homo sapi ( 193) 189 39.3 0.0081 NP_689627 (OMIM: 613483) class E basic helix-loop- ( 381) 193 40.1 0.0091 >>NP_067014 (OMIM: 611635) neurogenic differentiation fa (331 aa) initn: 2245 init1: 2245 opt: 2245 Z-score: 1850.0 bits: 350.6 E(85289): 2.6e-96 Smith-Waterman score: 2245; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331) 10 20 30 40 50 60 pF1KB9 MSKTFVKSKEMGELVNTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSIEEEEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 MSKTFVKSKEMGELVNTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSIEEEEEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 EEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 EEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 QKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 QKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 VLLEKHEDKSPICDSAISVHNFNYQSPGLPSPPYGHMETHLLHLKPQVFKSLGESSFGSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 VLLEKHEDKSPICDSAISVHNFNYQSPGLPSPPYGHMETHLLHLKPQVFKSLGESSFGSH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 LPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSYSFMPHYPSSSLSSGHVHSTPFQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 LPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSYSFMPHYPSSSLSSGHVHSTPFQA 250 260 270 280 290 300 310 320 330 pF1KB9 GTPRYDVPIDMSYDSYPHHGIGTQLNTVFTE ::::::::::::::::::::::::::::::: NP_067 GTPRYDVPIDMSYDSYPHHGIGTQLNTVFTE 310 320 330 >>NP_002491 (OMIM: 125853,601724,606394) neurogenic diff (356 aa) initn: 1210 init1: 714 opt: 1102 Z-score: 914.6 bits: 177.7 E(85289): 3.3e-44 Smith-Waterman score: 1207; 53.4% identity (77.4% similar) in 358 aa overlap (1-329:1-354) 10 20 30 40 50 pF1KB9 MSKTFVKSKEMGELV--NTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSI---- :.:.. .: ::: . ::: :. :.::.: .: ... : ... :.::. NP_002 MTKSYSESGLMGEPQPQGPPSWTDECLSSQDEEHEADKKEDD---LEAMNAEEDSLRNGG 10 20 30 40 50 60 70 80 90 100 pF1KB9 -----------EEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGL :::::::.: .::::::::::::::::::::. ::.:::::::.::::: NP_002 EEEDEDEDLEEEEEEEEEDDDQKPKRRGPKKKKMTKARLERFKLRRMKANARERNRMHGL 60 70 80 90 100 110 110 120 130 140 150 160 pF1KB9 NDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLS : ::::::.:.::::::::::::::::::.::::::::.:..:..:. .::. :::::: NP_002 NAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLS 120 130 140 150 160 170 170 180 190 200 210 pF1KB9 QPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSA---ISVHNFNYQSPGLPSPPYGHMET- :::.:::::::::.:.. : :...: : .: . :: ..:::::::::::: :.. NP_002 QPTTNLVAGCLQLNPRTFLPEQNQDMPPHLPTASASFPVHPYSYQSPGLPSPPYGTMDSS 180 190 200 210 220 230 220 230 240 250 260 270 pF1KB9 HLLHLKP--QVFKSLGESSFGSHLPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSY :..:.:: ..... : : : : ::..: ..:::.:::::.::::.:.. : ..::.: NP_002 HVFHVKPPPHAYSAALEPFFESPLTDCTSPSFDGPLSPPLSINGNFSFKHEPSAEFEKNY 240 250 260 270 280 290 280 290 300 310 320 330 pF1KB9 SFMPHYPSSSLSSGHVHSTPFQAGT--PRYDVPID--MSYDSYPHHG--IGTQLNTVFTE .: :::...:.... :.. : .:: :: ..::: ::.::. :: ...:::..: NP_002 AFTMHYPAATLAGAQSHGSIF-SGTAAPRCEIPIDNIMSFDSHSHHERVMSAQLNAIFHD 300 310 320 330 340 350 >>NP_073565 (OMIM: 611513) neurogenic differentiation fa (337 aa) initn: 737 init1: 737 opt: 827 Z-score: 690.0 bits: 136.0 E(85289): 1.1e-31 Smith-Waterman score: 827; 51.3% identity (72.3% similar) in 267 aa overlap (49-307:54-318) 20 30 40 50 60 70 pF1KB9 SWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHDSIEEEEEEEEDGEK--PKRRGPKKKK :: .. ::::..::. :. :.::: .::: NP_073 ECEDQKQIKKPESFSKQIVLRGKSIKRAPGEETEKEEEEEDREEEDENGLPRRRGLRKKK 30 40 50 60 70 80 80 90 100 110 120 130 pF1KB9 MTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYI :: :::: . :: .::::::.:::::::::::::.:.::::::::::::::::::.::: NP_073 TTKLRLERVKFRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYI 90 100 110 120 130 140 140 150 160 170 180 190 pF1KB9 WALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSA :::::.:. :. :. ::. :::::::::.:::::::::. .: :. . . . : NP_073 WALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGCLQLNARSFLMGQGGEAAHHTRSP 150 160 170 180 190 200 200 210 220 230 240 250 pF1KB9 ISVHNFNYQSPGLPSPP-YGHMETHLLHLKPQVFKSLGESSFGSHLPDCSTPPYEGPLTP :. :.:: : .:: .: ... .:: . : :: . : :.:..: .::::.: NP_073 YSTFYPPYHSPELTTPPGHGTLDNSK-SMKPYNYCSAYESFYESTSPECASPQFEGPLSP 210 220 230 240 250 260 260 270 280 290 300 310 pF1KB9 P-LSISGNFSLKQDGSPDLEKSYSFMPHY----PSSSLSSGHVHSTPFQAGTPRYDVPID : .. .: :::::. . : :.:.. :: : . :..: . : .. : ::. NP_073 PPINYNGIFSLKQEETLDYGKNYNYGMHYCAVPPRGPLGQGAMFRLPTDSHFP-YDLHLR 270 280 290 300 310 320 320 330 pF1KB9 MSYDSYPHHGIGTQLNTVFTE NP_073 SQSLTMQDELNAVFHN 330 >>NP_006151 (OMIM: 601725) neurogenic differentiation fa (382 aa) initn: 926 init1: 642 opt: 653 Z-score: 546.9 bits: 109.7 E(85289): 1e-23 Smith-Waterman score: 849; 48.4% identity (67.7% similar) in 316 aa overlap (39-329:65-380) 10 20 30 40 50 60 pF1KB9 KEMGELVNTPSWMDKGLGSQNEVKEEESRPGTYGMLSSLTEEHD-SIEEEEEEEED---- :: . :. . :: . . ::::::::. NP_006 DAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEATLAEVKEEGELGGEEEEEEEEEEGLD 40 50 60 70 80 90 70 80 90 100 110 120 pF1KB9 ---GEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKT ::.::.:::::.::::::::: . :: :::::::.::: :: ::::::.:.:::::: NP_006 EAEGERPKKRGPKKRKMTKARLERSKLRRQKANARERNRMHDLNAALDNLRKVVPCYSKT 100 110 120 130 140 150 130 140 150 160 170 180 pF1KB9 QKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQS ::::::::::::.::::::::.:..:. :. ..:. :::::::::.:::::::::. .. NP_006 QKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRN 160 170 180 190 200 210 190 200 210 220 pF1KB9 VLLEKHEDKSPICDSA---ISVHNFNYQSPGLPSPP------YGHMETHLL--HLKPQVF : :. : . .. ...: . : : . : .: : : .. NP_006 FLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAGAQCQAAGGLGGGAAHALRTHGYCAAY 220 230 240 250 260 270 230 240 250 260 270 280 pF1KB9 KSL-GESSFGSHLPDCSTPPYEGPLTPPLSISGNFSLKQDGSPDLEKSYSFMPHYPSSSL ..: . .. :. :: .. :::::.::: ..::::::::.::: :::: . :: . NP_006 ETLYAAAGGGGASPDYNSSEYEGPLSPPLCLNGNFSLKQDSSPDHEKSYHYSMHYSALPG 280 290 300 310 320 330 290 300 310 320 330 pF1KB9 SSGHVHSTPFQAGTPRYDVPID--MSYDSYPHHGIGT---QLNTVFTE : :. : ... : : . .::: . :: : .::. : NP_006 SRPTGHGLVFGSSAVRGGVHSENLLSYDMHLHHDRGPMYEELNAFFHN 340 350 360 370 380 >>NP_006152 (OMIM: 601726) neurogenin-1 [Homo sapiens] (237 aa) initn: 296 init1: 268 opt: 312 Z-score: 270.9 bits: 58.0 E(85289): 2.4e-08 Smith-Waterman score: 312; 39.0% identity (57.6% similar) in 177 aa overlap (60-226:65-231) 30 40 50 60 70 80 pF1KB9 EVKEEESRPGTYGMLSSLTEEHDSIEEEEEEEEDGEKPKRRGPKKKKMTKARLERFR-AR .... :. .::: . . ..: :. .: .: NP_006 LQQAASASGPPAPARRGAPNISRASEVPGAQDDEQERRRRRG-RTRVRSEALLHSLRRSR 40 50 60 70 80 90 90 100 110 120 130 140 pF1KB9 RVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETG-Q ::::: :::.:::.:: ::: :: :.: . ::.::::::.: ::::::.:.:. . : NP_006 RVKANDRERNRMHNLNAALDALRSVLPSFPDDTKLTKIETLRFAYNYIWALAETLRLADQ 100 110 120 130 140 150 150 160 170 180 190 pF1KB9 TPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQSVLLEKHE------DKSPICD--SAISV : : : : : :: :: : . . ::. : : . NP_006 GLPGGGARERLLPPQCVP-------CLP-GPPSPASDAESWGSGAAAASPLSDPSSPAAS 160 170 180 190 200 200 210 220 230 240 250 pF1KB9 HNFNYQSPGLPSPPYGHMETHLLHLKPQVFKSLGESSFGSHLPDCSTPPYEGPLTPPLSI ..:.:. :: : . . ::: : NP_006 EDFTYR-PGDPVFSFPSLPKDLLHTTPCFIPYH 210 220 230 >>NP_076924 (OMIM: 606624) neurogenin-2 [Homo sapiens] (272 aa) initn: 331 init1: 245 opt: 267 Z-score: 233.3 bits: 51.2 E(85289): 3e-06 Smith-Waterman score: 267; 33.3% identity (59.4% similar) in 192 aa overlap (66-244:89-271) 40 50 60 70 80 90 pF1KB9 SRPGTYGMLSSLTEEHDSIEEEEEEEEDGEKPKR-RGPKKKKMTKARLERFR-ARRVKAN .:.: :. .. : ..:.. .::.::: NP_076 AGQGARGGVAAGAEGCRPARLLGLVHDCKRRPSRARAVSRGAKTAETVQRIKKTRRLKAN 60 70 80 90 100 110 100 110 120 130 140 150 pF1KB9 ARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKG :::.:::.:: ::: ::.:.: . . ::.::::::.:.::::::.:.:. .. : : NP_076 NRERNRMHNLNAALDALREVLPTFPEDAKLTKIETLRFAHNYIWALTETLRLADHCGGGG 120 130 140 150 160 170 160 170 180 190 200 pF1KB9 -------FVEMLCKGLSQPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSAISVHNFNYQS : : . . . .. : .. . .: :. .:: .:..: .. . : NP_076 GGLPGALFSEAVLLSPGGASAALSSSGDSPSPASTW---SCTNSPAPSSSVSSNSTSPYS 180 190 200 210 220 230 210 220 230 240 250 260 pF1KB9 PGL-PSPPYGHMETHLLHLKPQVFKSLGESSFGSHLP---DCSTPPYEGPLTPPLSISGN : :. : : . . . .: . .. ::: :: NP_076 CTLSPASPAG---SDMDYWQP---PPPDKHRYAPHLPIARDCI 240 250 260 270 270 280 290 300 310 320 pF1KB9 FSLKQDGSPDLEKSYSFMPHYPSSSLSSGHVHSTPFQAGTPRYDVPIDMSYDSYPHHGIG >>XP_016871769 (OMIM: 604882,610370) PREDICTED: neurogen (214 aa) initn: 281 init1: 233 opt: 260 Z-score: 229.0 bits: 50.1 E(85289): 5.1e-06 Smith-Waterman score: 260; 50.0% identity (71.7% similar) in 92 aa overlap (59-143:48-139) 30 40 50 60 70 80 pF1KB9 NEVKEEESRPGTYGMLSSLTEEHDSIEEEEEEEEDGEK--PK----RRGPKKKKMTKARL : :: : . :. ::: ... .. : XP_016 ERSFPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELAL 20 30 40 50 60 70 90 100 110 120 130 140 pF1KB9 ER-FRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSE . :.:: ::: :::.:::.::.::: :: :.: . ::.::::::.:.::::::.. XP_016 SKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQ 80 90 100 110 120 130 150 160 170 180 190 200 pF1KB9 VLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSAISVHN .: XP_016 TLRIADHSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAGSLSPAASLEERPGLLGA 140 150 160 170 180 190 >>NP_066279 (OMIM: 604882,610370) neurogenin-3 [Homo sap (214 aa) initn: 281 init1: 233 opt: 260 Z-score: 229.0 bits: 50.1 E(85289): 5.1e-06 Smith-Waterman score: 260; 50.0% identity (71.7% similar) in 92 aa overlap (59-143:48-139) 30 40 50 60 70 80 pF1KB9 NEVKEEESRPGTYGMLSSLTEEHDSIEEEEEEEEDGEK--PK----RRGPKKKKMTKARL : :: : . :. ::: ... .. : NP_066 ERSFPRASEDEVTCPTSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELAL 20 30 40 50 60 70 90 100 110 120 130 140 pF1KB9 ER-FRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSE . :.:: ::: :::.:::.::.::: :: :.: . ::.::::::.:.::::::.. NP_066 SKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQ 80 90 100 110 120 130 150 160 170 180 190 200 pF1KB9 VLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSAISVHN .: NP_066 TLRIADHSLYALEPPAPHCGELGSPGGSPGDWGSLYSPVSQAGSLSPAASLEERPGLLGA 140 150 160 170 180 190 >>NP_005163 (OMIM: 601461) protein atonal homolog 1 [Hom (354 aa) initn: 275 init1: 231 opt: 246 Z-score: 214.5 bits: 48.1 E(85289): 3.3e-05 Smith-Waterman score: 246; 50.0% identity (77.4% similar) in 84 aa overlap (68-151:144-220) 40 50 60 70 80 90 pF1KB9 PGTYGMLSSLTEEHDSIEEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKANARER ..:.:..:... .. . ::. :::::: NP_005 SSSKSPGPVKVREQLCKLKGGVVVDELGCSRQRAPSSKQVNGVQ----KQRRLAANARER 120 130 140 150 160 100 110 120 130 140 150 pF1KB9 TRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEM :::::: :.:.:: :.: ... .:::: :::..:. :: ::::.: ::: : NP_005 RRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELL---QTPSGGEQPPP 170 180 190 200 210 220 160 170 180 190 200 210 pF1KB9 LCKGLSQPTSNLVAGCLQLGPQSVLLEKHEDKSPICDSAISVHNFNYQSPGLPSPPYGHM NP_005 PPASCKSDHHHLRTAASYEGGAGNATAAGAQQASGGSQRPTPPGSCRTRFSAPASAGGYS 230 240 250 260 270 280 >>NP_660161 (OMIM: 609875) protein atonal homolog 7 [Hom (152 aa) initn: 221 init1: 221 opt: 224 Z-score: 201.7 bits: 44.5 E(85289): 0.00017 Smith-Waterman score: 224; 48.1% identity (72.8% similar) in 81 aa overlap (81-160:34-114) 60 70 80 90 100 110 pF1KB9 HDSIEEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNL ::: ::. :::::: ::.::: :.: : NP_660 CKPSGPPAGARVAPPCAGGTECAGTCAGAGRLESAARRRLAANARERRRMQGLNTAFDRL 10 20 30 40 50 60 120 130 140 150 160 pF1KB9 RRVMPCYSKTQKLSKIETLRLARNYIWALSEVL-ETGQTPEGKGFVEMLCKGLSQPTSNL :::.: ... .:::: :::..: .:: ::...: :. . . .: . :. NP_660 RRVVPQWGQDKKLSKYETLQMALSYIMALTRILAEAERFGSERDWVGLHCEHFGRDHYLP 70 80 90 100 110 120 170 180 190 200 210 220 pF1KB9 VAGCLQLGPQSVLLEKHEDKSPICDSAISVHNFNYQSPGLPSPPYGHMETHLLHLKPQVF NP_660 FPGAKLPGESELYSQRLFGFQPEPFQMAT 130 140 150 331 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 17:48:39 2016 done: Fri Nov 4 17:48:41 2016 Total Scan time: 8.950 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]