Result of FASTA (ccds) for
pF1KB9634
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9634, 325 aa
1>>>pF1KB9634 325 - 325 aa - 325 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4633+/-0.000842; mu= -5.5724+/- 0.051
mean_var=332.0092+/-71.265, 0's: 0 Z-trim(117.9): 16 B-trim: 2174 in 2/53
Lambda= 0.070388
statistics sampled from 18729 (18746) to 18729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.576), width: 16
Scan time: 3.390
The best scores are: opt bits E(32554)
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 2060 222.2 8.4e-58
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 2060 222.2 8.5e-58
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 2060 222.2 9e-58
>>CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 (598 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1151.2 bits: 222.2 E(32554): 8.4e-58
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAPTALPSFSTFMDGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 TGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQVYGCYPGPLSGPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 DEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTYEGLRAWTEQLPKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMPTAFPGLAPTSPHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKVPRSPRWG
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 EGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK
250 260 270 280 290 300
310 320
pF1KB9 LLLEMERGWPHPIGTCGLPLGSPPS
CCDS88 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQPPDAS
310 320 330 340 350 360
>>CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 (611 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1151.1 bits: 222.2 E(32554): 8.5e-58
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:14-305)
10 20 30 40
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAP
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEFIKPTMDLASPEAAPAAP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 TALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSSSSATSPASASFKFEDFQ
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 VYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQLSPWDGSFGHFSPSQTY
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 EGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLFPSQATHQLGEGESYSMP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 TAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVCGDNASCQHYGVRTCEGC
250 260 270 280 290 300
290 300 310 320
pF1KB9 KGFFKVPRSPRWGLLLEMERGWPHPIGTCGLPLGSPPS
:::::
CCDS55 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG
310 320 330 340 350 360
>>CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 (652 aa)
initn: 2060 init1: 2060 opt: 2060 Z-score: 1150.7 bits: 222.2 E(32554): 9e-58
Smith-Waterman score: 2060; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:55-346)
10 20 30
pF1KB9 MPCIQAQYGTPAPSPGPRDHLASDPLTPEF
::::::::::::::::::::::::::::::
CCDS73 PPRQPGSFCWALKADGIMWLAKACWSIQSEMPCIQAQYGTPAPSPGPRDHLASDPLTPEF
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB9 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IKPTMDLASPEAAPAAPTALPSFSTFMDGYTGEFDTFLYQLPGTVQPCSSASSSASSTSS
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB9 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SSATSPASASFKFEDFQVYGCYPGPLSGPVDEALSSSGSDYYGSPCSAPSPSTPSFQPPQ
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB9 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LSPWDGSFGHFSPSQTYEGLRAWTEQLPKASGPPQPPAFFSFSPPTGPSPSLAQSPLKLF
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB9 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSQATHQLGEGESYSMPTAFPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEGRCAVC
270 280 290 300 310 320
280 290 300 310 320
pF1KB9 GDNASCQHYGVRTCEGCKGFFKVPRSPRWGLLLEMERGWPHPIGTCGLPLGSPPS
::::::::::::::::::::::
CCDS73 GDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAV
330 340 350 360 370 380
325 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:53:16 2016 done: Fri Nov 4 17:53:17 2016
Total Scan time: 3.390 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]