FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9635, 323 aa 1>>>pF1KB9635 323 - 323 aa - 323 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.9249+/-0.000314; mu= 2.0756+/- 0.020 mean_var=255.3907+/-52.108, 0's: 0 Z-trim(124.5): 30 B-trim: 429 in 1/58 Lambda= 0.080255 statistics sampled from 46390 (46426) to 46390 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.544), width: 16 Scan time: 7.470 The best scores are: opt bits E(85289) XP_005260965 (OMIM: 606386) PREDICTED: oligodendro ( 323) 2159 262.1 1.1e-69 NP_005797 (OMIM: 606386) oligodendrocyte transcrip ( 323) 2159 262.1 1.1e-69 NP_786923 (OMIM: 609323) oligodendrocyte transcrip ( 272) 613 83.1 7.4e-16 NP_689627 (OMIM: 613483) class E basic helix-loop- ( 381) 455 64.9 3e-10 NP_542173 (OMIM: 609331) class E basic helix-loop- ( 241) 347 52.2 1.3e-06 NP_620450 (OMIM: 606385) oligodendrocyte transcrip ( 271) 317 48.8 1.5e-05 NP_006151 (OMIM: 601725) neurogenic differentiatio ( 382) 275 44.1 0.00057 NP_006152 (OMIM: 601726) neurogenin-1 [Homo sapien ( 237) 244 40.3 0.0048 NP_835455 (OMIM: 607194,609069,615935) pancreas tr ( 328) 238 39.7 0.0099 >>XP_005260965 (OMIM: 606386) PREDICTED: oligodendrocyte (323 aa) initn: 2159 init1: 2159 opt: 2159 Z-score: 1372.2 bits: 262.1 E(85289): 1.1e-69 Smith-Waterman score: 2159; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323) 10 20 30 40 50 60 pF1KB9 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV 250 260 270 280 290 300 310 320 pF1KB9 PPPHHHVSAMGAGSLPRLTSDAK ::::::::::::::::::::::: XP_005 PPPHHHVSAMGAGSLPRLTSDAK 310 320 >>NP_005797 (OMIM: 606386) oligodendrocyte transcription (323 aa) initn: 2159 init1: 2159 opt: 2159 Z-score: 1372.2 bits: 262.1 E(85289): 1.1e-69 Smith-Waterman score: 2159; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323) 10 20 30 40 50 60 pF1KB9 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV 250 260 270 280 290 300 310 320 pF1KB9 PPPHHHVSAMGAGSLPRLTSDAK ::::::::::::::::::::::: NP_005 PPPHHHVSAMGAGSLPRLTSDAK 310 320 >>NP_786923 (OMIM: 609323) oligodendrocyte transcription (272 aa) initn: 924 init1: 554 opt: 613 Z-score: 405.7 bits: 83.1 E(85289): 7.4e-16 Smith-Waterman score: 912; 50.2% identity (70.9% similar) in 323 aa overlap (1-323:1-268) 10 20 30 40 50 60 pF1KB9 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG :.::.: :::: :::. :...: . . . . ::: .: .. NP_786 MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKM--------- 10 20 30 40 50 70 80 90 100 110 120 pF1KB9 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR ::..:. .: :. :. :: : :::..: .:::::::::.::::: NP_786 -----PGESLSRAGAKA-----------AGESSKYKIKKQLSEQDLQQLRLKINGRERKR 60 70 80 90 130 140 150 160 170 180 pF1KB9 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH :::::.:::::::::::::::::::::::::::::::::::::.:::::::::.:::::: NP_786 MHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGH 100 110 120 130 140 150 190 200 210 220 230 240 pF1KB9 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS :..:: :: ..::: .::: ::...: :. :::: ..: ... :.. .:. NP_786 HSAFH---CGTVGHSA------GHPAHAANSVH-PV--HPIL---GGALSSGNASSPLSA 160 170 180 190 200 250 260 270 280 290 300 pF1KB9 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV :: ::..:.:::::.:::.::. : :: .:::::.:.::::..::. NP_786 AS-----LPAIGTIRPPHSLLKAPSTPPALQLG---------SGFQHWAGLPCPCTICQM 210 220 230 240 310 320 pF1KB9 PPPHHHVSAMGAGSLPRLTSDAK ::: : .::...... ::....: NP_786 PPPPH-LSALSTANMARLSAESKDLLK 250 260 270 >>NP_689627 (OMIM: 613483) class E basic helix-loop-heli (381 aa) initn: 598 init1: 367 opt: 455 Z-score: 305.0 bits: 64.9 E(85289): 3e-10 Smith-Waterman score: 458; 44.2% identity (68.8% similar) in 224 aa overlap (23-241:167-372) 10 20 30 40 50 pF1KB9 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELS : : :..: ::. .. :. . . NP_689 SVAESSGGEQSPDDDSDGRCELVLRAGVADPRASPGAGG----GGAKAAEGCSNAHLHGG 140 150 160 170 180 190 60 70 80 90 100 110 pF1KB9 AELR-GAMGSAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRL : . :..:..:. :.. :.:: ..:.: :...::...::.::.:.: . ::: NP_689 ASVPPGGLGGGGGG-GSSSGSSGGGGGSGSGSGGSSSSSSSSSKKSKEQ------KALRL 200 210 220 230 240 120 130 140 150 160 170 pF1KB9 KINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKR .::.:::.:::::: :.: :: :.::::.:::::::::::::::.::::: ...::::.: NP_689 NINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALEEMRR 250 260 270 280 290 300 180 190 200 210 220 pF1KB9 LVSEIYGGH--HAGFHPSACGGLAHSAPLPAATAHPAAAAH--AAHHPAVHHPILPPAAA ::. . :. :. ::. .. : .: : ::: .:. :: .: :::::. NP_689 LVAYLNQGQAISAASLPSSAAAAAAAAAL-----HPALGAYEQAAGYP--FSAGLPPAAS 310 320 330 340 350 230 240 250 260 270 280 pF1KB9 AAAAAAAAAAVSSASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQH : .:::. NP_689 CPEKCALFNSVSSSLCKQCTEKP 360 370 380 >>NP_542173 (OMIM: 609331) class E basic helix-loop-heli (241 aa) initn: 394 init1: 336 opt: 347 Z-score: 239.9 bits: 52.2 E(85289): 1.3e-06 Smith-Waterman score: 364; 41.5% identity (67.0% similar) in 188 aa overlap (24-211:53-215) 10 20 30 40 50 pF1KB9 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSA ::. :. : :: . .. :. : .: NP_542 LSGDAYLALSHGYAAAAAGLAYGAAREPEAARGYGTPG---PGGDLPAA-PAPRAPAQAA 30 40 50 60 70 60 70 80 90 100 110 pF1KB9 ELRGAMGSAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKI : :.: . ::. ..:.. . .. ::.. .. ..: ..:::.: NP_542 E------SSGEQSGDE--DDAFEQRRRRRGPGS---AADGRRRPREQ------RSLRLSI 80 90 100 110 120 120 130 140 150 160 170 pF1KB9 NSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLV :.:::.:::::: :.:::: :.::::.:::::::::::::::.::::: ...:.::.::: NP_542 NARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALDEMRRLV 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB9 SEIYGGHHAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAA . . :. :. .: . : .:. ::. : .:. : NP_542 AFLNQGQ--GL--AAPVNAAPLTPFGQATVCPFSAGAALGPCPDKCAAFSGTPSALCKHC 190 200 210 220 230 240 250 260 270 280 290 pF1KB9 AAAAVSSASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPC NP_542 HEKP 240 >>NP_620450 (OMIM: 606385) oligodendrocyte transcription (271 aa) initn: 387 init1: 159 opt: 317 Z-score: 220.5 bits: 48.8 E(85289): 1.5e-05 Smith-Waterman score: 358; 36.5% identity (50.7% similar) in 304 aa overlap (11-301:19-253) 10 20 30 40 pF1KB9 MDSDASLVSSRPSSPEPDDLFLPA--------RSKGSSGSAFTGGTVSSSTP ::. .: :: : : :. ::.:. :..: :.:. NP_620 MYYAVSQARVNAVPGTMLRPQ--RPGDLQLGASLYELVGYRQPPSSSSSSTSSTSSTSSS 10 20 30 40 50 50 60 70 80 90 100 pF1KB9 SDCPPELSAELRGAMGSAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEP : : : : : :.: ::: . ..:.. : : : NP_620 STTAPLLPKAAR-EKPEAPAEPPGPGPGSG-------------AHPGGSARPDAK---EE 60 70 80 90 100 110 120 130 140 150 pF1KB9 ELQQLRLKINSRERKRMHDLNIAMDGLREV-MPY--AH--GPSVRKLSKIATLLLARNYI . :::: ::::::::::.:::.:::.:::: .:: :: : :::::::::::::::: NP_620 QQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYI 110 120 130 140 150 160 160 170 180 190 200 210 pF1KB9 LMLTNSLEEMKRLVSEIYGGHHAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHH :.: .::.:..: ..: : :.: : : :: .: :... NP_620 LLLGSSLQELRRALGE-------GAGPAAPRLLL--AGLPLLAAAPGSV----------- 170 180 190 200 220 230 240 250 260 270 pF1KB9 PILPPAAAAAAAAAAAAAVSSASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGS .: :.:.. : : : .: .:: : . : :::.:: NP_620 -LLAPGAVGPPDALRPAKYLSLALD----------EPPCGQFALP--------GGGAGGP 210 220 230 240 280 290 300 310 320 pF1KB9 GASGGFQHWGGMPCPCSMCQVPPPHHHVSAMGAGSLPRLTSDAK : : :..:. : NP_620 GL-----------CTCAVCKFPHLVPASLGLAAVQAQFSK 250 260 270 >>NP_006151 (OMIM: 601725) neurogenic differentiation fa (382 aa) initn: 246 init1: 126 opt: 275 Z-score: 192.3 bits: 44.1 E(85289): 0.00057 Smith-Waterman score: 275; 31.4% identity (52.3% similar) in 287 aa overlap (55-316:60-333) 30 40 50 60 70 80 pF1KB9 RSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMGSAGAHPGDKLGG--SGFKSSSSST ::: :. .. : : .: . NP_006 RSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGTEATLAEVKEEGELGGEEEEEEEE 30 40 50 60 70 80 90 100 110 120 130 pF1KB9 SSSTSSAAASSTKK---DKKQMTEPELQQLRL---KINSRERKRMHDLNIAMDGLREVMP . . : . :: :..::. .:.. .: : :.:::.:::::: :.:.::.:.: NP_006 EEGLDEAEGERPKKRGPKKRKMTKARLERSKLRRQKANARERNRMHDLNAALDNLRKVVP 90 100 110 120 130 140 140 150 160 170 180 pF1KB9 -YAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKR--LVSEIYGGHHAGFHPSA----- :.. ..::::: :: ::.::: :.. :. :: ::: . .. .:.. NP_006 CYSK---TQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAG 150 160 170 180 190 200 190 200 210 220 230 240 pF1KB9 CGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSSASLPGSGL : : : : :. :.. : . :: : . :.: ::. : : NP_006 CLQLNSRNFLTEQGADGAGRFHGSGGPFAMHPYPYPCSRLAGAQCQAAG-------GLGG 210 220 230 240 250 250 260 270 280 290 300 pF1KB9 PSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCP-C-----SMCQVPP .. ..: :: . . :: .::::.: .. .. : . : : :. : NP_006 GAAHALRT-HGYCAAYETLYAA--AGGGGASPDYNSSEYEGPLSPPLCLNGNFSLKQDSS 260 270 280 290 300 310 310 320 pF1KB9 PHHHVS---AMGAGSLPRLTSDAK : :. : .: ..:: NP_006 PDHEKSYHYSMHYSALPGSRPTGHGLVFGSSAVRGGVHSENLLSYDMHLHHDRGPMYEEL 320 330 340 350 360 370 >>NP_006152 (OMIM: 601726) neurogenin-1 [Homo sapiens] (237 aa) initn: 230 init1: 122 opt: 244 Z-score: 175.6 bits: 40.3 E(85289): 0.0048 Smith-Waterman score: 244; 30.4% identity (54.4% similar) in 237 aa overlap (29-258:17-237) 10 20 30 40 50 60 pF1KB9 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG :::: ..: . :: :.:. : . NP_006 MPARLETCISDLDCASSSGSDLSGFL---TDEEDC-----ARLQQA-A 10 20 30 70 80 90 100 110 pF1KB9 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQM-TEPELQQLR----LKINS ::.. :. :. : .: . .. .. .. . .. .: :..:: .: :. NP_006 SASGPPAPARRGAPNISRASEVPGAQDDEQERRRRRGRTRVRSEALLHSLRRSRRVKAND 40 50 60 70 80 90 120 130 140 150 160 170 pF1KB9 RERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSE :::.:::.:: :.:.:: :.: :. ::.:: :: .: ::: :...: ::... NP_006 RERNRMHNLNAALDALRSVLP--SFPDDTKLTKIETLRFAYNYIWALAETL----RLADQ 100 110 120 130 140 150 180 190 200 210 220 230 pF1KB9 IY--GGHHAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAA :: . . : : . : ::. :. ... :: : . : : :. . NP_006 GLPGGGARERLLPPQCVPCLPGPPSPASDAESWGSGAAAASP-LSDPSSPAASEDFTYRP 160 170 180 190 200 210 240 250 260 270 280 290 pF1KB9 AAAAVSSASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPC . . : ::: . : .. . : : NP_006 GDPVFSFPSLPKDLLHTTPCFIPYH 220 230 >>NP_835455 (OMIM: 607194,609069,615935) pancreas transc (328 aa) initn: 237 init1: 142 opt: 238 Z-score: 170.0 bits: 39.7 E(85289): 0.0099 Smith-Waterman score: 239; 30.4% identity (53.0% similar) in 230 aa overlap (4-226:64-277) 10 20 30 pF1KB9 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSA :.. . .:. : : : :.:. : NP_835 DPLEDGDELLADEQAEVEFLSHQLHEYCYRDGACLLLQPAPPAAP-LALAPPSSGGLGEP 40 50 60 70 80 90 40 50 60 70 80 90 pF1KB9 FTGGTVSSSTPSDCPPELSAELRGAMGSAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASS :: . . :: :. : :.: .:.. : .. . :.:::.. NP_835 DDGGGGGYCCETGAPPGGFPYSPGSPPSCLAYP---CAGAAVLSPGARLRG-LSGAAAAA 100 110 120 130 140 100 110 120 130 140 150 pF1KB9 TKKDKKQMTEPELQQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLL ... .. .: :::::: : :::.::...: :..::: .: : ..:::. :: NP_835 ARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTL--PYEKRLSKVDTLR 150 160 170 180 190 200 160 170 180 190 200 pF1KB9 LARNYILMLTNSLEEMKRLVSEIYGGHHAGFHPSACGGLAHSAPL----PAATAHPAAAA :: .:: : : :. . . :: .: ::: . .. : :.. :. . NP_835 LAIGYI----NFLSELVQADLPLRGGGAGG-----CGGPGGGGRLGGDSPGSQAQKVIIC 210 220 230 240 250 210 220 230 240 250 260 pF1KB9 H-AAHHPAVHHPI--LPPAAAAAAAAAAAAAVSSASLPGSGLPSVGSIRPPHGLLKSPSA : ... :. : ::: : NP_835 HRGTRSPSPSDPDYGLPPLAGHSLSWTDEKQLKEQNIIRTAKVWTPEDPRKLNSKSSFNN 260 270 280 290 300 310 323 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:04:32 2016 done: Tue Nov 8 01:04:33 2016 Total Scan time: 7.470 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]