FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9636, 272 aa
  1>>>pF1KB9636 272 - 272 aa - 272 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6436+/-0.000734; mu= 11.4727+/- 0.045
 mean_var=142.2726+/-28.602, 0's: 0 Z-trim(114.3): 28  B-trim: 0 in 0/52
 Lambda= 0.107526
 statistics sampled from 14871 (14899) to 14871 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.458), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS5186.1 OLIG3 gene_id:167826|Hs108|chr6         ( 272) 1827 294.0 7.6e-80
CCDS13620.1 OLIG2 gene_id:10215|Hs108|chr21        ( 323)  613 105.7 4.2e-23
CCDS6179.1 BHLHE22 gene_id:27319|Hs108|chr8        ( 381)  379 69.5   4e-12


>>CCDS5186.1 OLIG3 gene_id:167826|Hs108|chr6              (272 aa)
 initn: 1827 init1: 1827 opt: 1827  Z-score: 1547.0  bits: 294.0 E(32554): 7.6e-80
Smith-Waterman score: 1827; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KB9 MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKMPGESLSRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKMPGESLSRAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 AKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VHPILGGALSSGNASSPLSAASLPAIGTIRPPHSLLKAPSTPPALQLGSGFQHWAGLPCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VHPILGGALSSGNASSPLSAASLPAIGTIRPPHSLLKAPSTPPALQLGSGFQHWAGLPCP
              190       200       210       220       230       240

              250       260       270  
pF1KB9 CTICQMPPPPHLSALSTANMARLSAESKDLLK
       ::::::::::::::::::::::::::::::::
CCDS51 CTICQMPPPPHLSALSTANMARLSAESKDLLK
              250       260       270  

>>CCDS13620.1 OLIG2 gene_id:10215|Hs108|chr21             (323 aa)
 initn: 924 init1: 554 opt: 613  Z-score: 528.2  bits: 105.7 E(32554): 4.2e-23
Smith-Waterman score: 912; 50.2% identity (70.9% similar) in 323 aa overlap (1-268:1-323)

               10        20        30        40        50          
pF1KB9 MNSDSSSVSSRASSPDMDEMYLRDHHHRHHHHQESRLNSVSSTQGDMMQKM---------
       :.::.: :::: :::. :...:  . .       .  .  ::: .:   ..         
CCDS13 MDSDASLVSSRPSSPEPDDLFLPARSKGSSGSAFTGGTVSSSTPSDCPPELSAELRGAMG
               10        20        30        40        50        60

                   60                   70        80        90     
pF1KB9 -----PGESLSRAGAKA-----------AGESSKYKIKKQLSEQDLQQLRLKINGRERKR
            ::..:. .: :.           :. ::  : :::..: .:::::::::.:::::
CCDS13 SAGAHPGDKLGGSGFKSSSSSTSSSTSSAAASSTKKDKKQMTEPELQQLRLKINSRERKR
               70        80        90       100       110       120

         100       110       120       130       140       150     
pF1KB9 MHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLEEMKRLVGEIYGGH
       :::::.:::::::::::::::::::::::::::::::::::::.:::::::::.::::::
CCDS13 MHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGH
              130       140       150       160       170       180

         160                170        180            190       200
pF1KB9 HSAFH---CGTVGHSA------GHPAHAANSVH-PV--HPIL---GGALSSGNASSPLSA
       :..::   :: ..:::      .::: ::...: :.  ::::   ..: ... :.. .:.
CCDS13 HAGFHPSACGGLAHSAPLPAATAHPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSS
              190       200       210       220       230       240

                   210       220       230                240      
pF1KB9 ASLP-----AIGTIRPPHSLLKAPSTPPALQLGSG---------FQHWAGLPCPCTICQM
       ::::     ..:.:::::.:::.::.  :  ::.:         ::::.:.::::..::.
CCDS13 ASLPGSGLPSVGSIRPPHGLLKSPSAAAAAPLGGGGGGSGASGGFQHWGGMPCPCSMCQV
              250       260       270       280       290       300

        250        260       270  
pF1KB9 PPPPH-LSALSTANMARLSAESKDLLK
       ::: : .::...... ::....:    
CCDS13 PPPHHHVSAMGAGSLPRLTSDAK    
              310       320       

>>CCDS6179.1 BHLHE22 gene_id:27319|Hs108|chr8             (381 aa)
 initn: 391 init1: 327 opt: 379  Z-score: 331.1  bits: 69.5 E(32554): 4e-12
Smith-Waterman score: 379; 50.3% identity (73.2% similar) in 153 aa overlap (53-205:217-356)

             30        40        50        60        70        80  
pF1KB9 RDHHHRHHHHQESRLNSVSSTQGDMMQKMPGESLSRAGAKAAGESSKYKIKKQLSEQDLQ
                                     : : : .:..... ::. : .:   ::  .
CCDS61 AHLHGGASVPPGGLGGGGGGGSSSGSSGGGGGSGSGSGGSSSSSSSSSKKSK---EQ--K
        190       200       210       220       230          240   

             90       100       110       120       130       140  
pF1KB9 QLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSLE
        :::.::.:::.:::::: :.: :: :.::::.:::::::::::::::.::::: ...::
CCDS61 ALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALE
             250       260       270       280       290       300 

            150       160       170       180       190       200  
pF1KB9 EMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPVHPILGGALSSGNASSPLSAAS
       ::.:::. .  :.  :.  ...  ::.  : ::     .:: ::.  ..  :. :.::. 
CCDS61 EMRRLVAYLNQGQ--AISAASLPSSAAAAAAAAA----LHPALGAYEQA--AGYPFSAGL
             310         320       330           340         350   

            210       220       230       240       250       260  
pF1KB9 LPAIGTIRPPHSLLKAPSTPPALQLGSGFQHWAGLPCPCTICQMPPPPHLSALSTANMAR
        ::                                                         
CCDS61 PPAASCPEKCALFNSVSSSLCKQCTEKP                                
           360       370       380                                 




272 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:53:54 2016 done: Fri Nov  4 17:53:54 2016
 Total Scan time:  2.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]