FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9641, 322 aa
  1>>>pF1KB9641 322 - 322 aa - 322 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7149+/-0.000976; mu= 7.8071+/- 0.059
 mean_var=264.2730+/-52.863, 0's: 0 Z-trim(114.0): 66  B-trim: 0 in 0/54
 Lambda= 0.078895
 statistics sampled from 14560 (14615) to 14560 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.449), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS4220.1 PURA gene_id:5813|Hs108|chr5            ( 322) 2151 257.5   1e-68
CCDS5499.1 PURB gene_id:5814|Hs108|chr7            ( 312)  753 98.4 7.9e-21


>>CCDS4220.1 PURA gene_id:5813|Hs108|chr5                 (322 aa)
 initn: 2151 init1: 2151 opt: 2151  Z-score: 1347.2  bits: 257.5 E(32554): 1e-68
Smith-Waterman score: 2151; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KB9 MADRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQHETQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MADRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQHETQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 YAQLGPSQPPDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YAQLGPSQPPDLAQAQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GSTQGQTIALPAQGLIEFRDALAKLIDDYGVEEEPAELPEGTSLTVDNKRFFFDVGSNKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GSTQGQTIALPAQGLIEFRDALAKLIDDYGVEEEPAELPEGTSLTVDNKRFFFDVGSNKY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GVFMRVSEVKPTYRNSITVPYKVWAKFGHTFCKYSEEMKKIQEKQREKRAACEQLHQQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GVFMRVSEVKPTYRNSITVPYKVWAKFGHTFCKYSEEMKKIQEKQREKRAACEQLHQQQQ
              250       260       270       280       290       300

              310       320  
pF1KB9 QQQEETAAATLLLQGEEEGEED
       ::::::::::::::::::::::
CCDS42 QQQEETAAATLLLQGEEEGEED
              310       320  

>>CCDS5499.1 PURB gene_id:5814|Hs108|chr7                 (312 aa)
 initn: 1048 init1: 498 opt: 753  Z-score: 487.4  bits: 98.4 E(32554): 7.9e-21
Smith-Waterman score: 1270; 71.7% identity (83.6% similar) in 286 aa overlap (31-288:4-289)

               10        20        30        40        50        60
pF1KB9 MADRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQHETQE
                                     : .:.  :::::  :   .. :: ..::::
CCDS54                            MADGDSGSERGGGGGPCGFQPASRGGGEQETQE
                                          10        20        30   

               70        80        90       100       110       120
pF1KB9 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH
       :::::.:::::::::::::::::::::::::::::.::::::::.::.:::: :::::::
CCDS54 LASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEH
            40        50        60        70        80        90   

              130          140       150       160       170       
pF1KB9 YAQLGPSQPPDLAQAQDE---PRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRG
       :::::::.: .:: . .:   ::::::::::::::::::.::::::::::::::::::::
CCDS54 YAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRG
           100       110       120       130       140       150   

              180        190       200       210                   
pF1KB9 -------PGLGSTQ-GQTIALPAQGLIEFRDALAKLIDDYGVEEE-----PA--------
              :: :. : :::::::::::::::::::::::::: :..     :.        
CCDS54 GGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGG
           160       170       180       190       200       210   

            220       230       240       250       260       270  
pF1KB9 ----ELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAKFGHTFC
           :::::::.:::.:::::::: ::::::.:::::::.:::.::::.:.:.::: .::
CCDS54 GLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFC
           220       230       240       250       260       270   

            280       290       300       310       320  
pF1KB9 KYSEEMKKIQEKQREKRAACEQLHQQQQQQQEETAAATLLLQGEEEGEED
       .:..:::.:::.::.:                                  
CCDS54 RYADEMKEIQERQRDKLYERRGGGSGGGEESEGEEVDED           
           280       290       300       310             




322 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:55:48 2016 done: Fri Nov  4 17:55:49 2016
 Total Scan time:  3.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]