Result of FASTA (omim) for
pF1KB9649
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9649, 441 aa
1>>>pF1KB9649 441 - 441 aa - 441 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2293+/-0.000332; mu= 2.0606+/- 0.021
mean_var=257.5928+/-52.886, 0's: 0 Z-trim(124.1): 117 B-trim: 2468 in 1/59
Lambda= 0.079911
statistics sampled from 44949 (45118) to 44949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.529), width: 16
Scan time: 9.420
The best scores are: opt bits E(85289)
NP_003099 (OMIM: 600898,615866) transcription fact ( 441) 2950 352.7 1.1e-96
NP_003098 (OMIM: 184430) transcription factor SOX- ( 474) 718 95.4 3.4e-19
NP_008874 (OMIM: 601947) transcription factor SOX- ( 315) 586 80.0 9.6e-15
NP_005977 (OMIM: 602148) transcription factor SOX- ( 391) 433 62.5 2.3e-09
NP_009015 (OMIM: 604974) transcription factor SOX- ( 276) 415 60.3 7.5e-09
NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 412 59.9 8.4e-09
NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 410 59.7 1.2e-08
NP_004180 (OMIM: 604747) transcription factor SOX- ( 240) 400 58.5 2.2e-08
NP_113627 (OMIM: 612202) transcription factor SOX- ( 388) 400 58.7 3.2e-08
NP_005625 (OMIM: 300123,312000,313430) transcripti ( 446) 400 58.7 3.5e-08
NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 400 58.7 3.5e-08
NP_008872 (OMIM: 602229,609136,611584,613266) tran ( 466) 381 56.5 1.7e-07
NP_000337 (OMIM: 114290,608160,616425) transcripti ( 509) 379 56.4 2.1e-07
NP_071899 (OMIM: 610928,613674) transcription fact ( 414) 377 56.0 2.1e-07
NP_060889 (OMIM: 137940,601618,607823) transcripti ( 384) 361 54.2 7.1e-07
NP_003131 (OMIM: 400044,400045,480000) sex-determi ( 204) 342 51.7 2e-06
XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621) 349 53.0 2.6e-06
NP_005677 (OMIM: 604748) transcription factor SOX- ( 622) 349 53.0 2.7e-06
NP_821078 (OMIM: 604975,616803) transcription fact ( 377) 343 52.1 3e-06
XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415) 343 52.1 3.2e-06
NP_001248343 (OMIM: 604975,616803) transcription f ( 642) 343 52.3 4.4e-06
XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715) 343 52.3 4.7e-06
XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715) 343 52.3 4.7e-06
XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715) 343 52.3 4.7e-06
XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715) 343 52.3 4.7e-06
XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716) 343 52.3 4.8e-06
NP_001317714 (OMIM: 604975,616803) transcription f ( 728) 343 52.3 4.8e-06
XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729) 343 52.3 4.8e-06
NP_694534 (OMIM: 604975,616803) transcription fact ( 750) 343 52.3 4.9e-06
XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750) 343 52.3 4.9e-06
XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 52.3 4.9e-06
XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 52.3 4.9e-06
XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 52.3 4.9e-06
XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 52.3 4.9e-06
XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 52.3 4.9e-06
XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 52.3 4.9e-06
XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 52.3 4.9e-06
XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 52.3 4.9e-06
XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751) 343 52.3 4.9e-06
NP_001248344 (OMIM: 604975,616803) transcription f ( 753) 343 52.4 4.9e-06
XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754) 343 52.4 4.9e-06
NP_008871 (OMIM: 604975,616803) transcription fact ( 763) 343 52.4 5e-06
XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764) 343 52.4 5e-06
XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792) 343 52.4 5.1e-06
XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793) 343 52.4 5.1e-06
NP_201583 (OMIM: 607257) transcription factor SOX- ( 808) 337 51.7 8.4e-06
NP_001139283 (OMIM: 607257) transcription factor S ( 801) 335 51.5 9.8e-06
NP_059978 (OMIM: 607257) transcription factor SOX- ( 804) 335 51.5 9.8e-06
NP_001139291 (OMIM: 607257) transcription factor S ( 841) 335 51.5 1e-05
NP_008948 (OMIM: 606698) transcription factor SOX- ( 501) 275 44.4 0.00084
>>NP_003099 (OMIM: 600898,615866) transcription factor S (441 aa)
initn: 2950 init1: 2950 opt: 2950 Z-score: 1856.7 bits: 352.7 E(85289): 1.1e-96
Smith-Waterman score: 2950; 100.0% identity (100.0% similar) in 441 aa overlap (1-441:1-441)
10 20 30 40 50 60
pF1KB9 MVQQAESLEAESNLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MVQQAESLEAESNLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKKPKMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RKKPKMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 GAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 QEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLYDEVRAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLYDEVRAG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGSSGEDADD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGSSGEDADD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSHFEFPDYCTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSHFEFPDYCTPE
370 380 390 400 410 420
430 440
pF1KB9 LSEMIAGDWLEANFSDLVFTY
:::::::::::::::::::::
NP_003 LSEMIAGDWLEANFSDLVFTY
430 440
>>NP_003098 (OMIM: 184430) transcription factor SOX-4 [H (474 aa)
initn: 1098 init1: 628 opt: 718 Z-score: 465.6 bits: 95.4 E(85289): 3.4e-19
Smith-Waterman score: 1010; 43.8% identity (64.6% similar) in 491 aa overlap (1-441:1-474)
10 20 30 40 50
pF1KB9 MVQQAESLE-AESNLPREALDTEEG-EF-MACSPVALDES-------DPDWCKTASGHIK
::::... : .:. : :. :. : :. .: ::. . . ::.:::: :::::
NP_003 MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 RPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHM
::::::::::.:::::::::::::::::::::::::::.::::.::::::::::::::::
NP_003 RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
70 80 90 100 110 120
120 130 140 150 160
pF1KB9 ADYPDYKYRPRKKPK---MDPSAKPSASQSP-EKS--AAGGGGGSAGGGAGGAKTSKGSS
::::::::::::: : . :.. .::..: ::. ..:.:::. :::.::.... :..
NP_003 ADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSNAGGG
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 KKCGKLKAPAAAGAKAGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCV---F
: . ..:..: . :. : :::: .. .::::.::.. . :
NP_003 ---GGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAASF
190 200 210 220 230
230 240 250 260 270
pF1KB9 LDEDDDD------DDDDDELQLQIKQEPDEE---DEEPPHQQLLQPPGQQ--PSQLLRRY
:. :. .: . :. . . : ::.. ... : :
NP_003 AAEQAGAAALLPLGAAADHHSLYKARTPSASASASSAASASAALAAPGKHLAEKKVKRVY
240 250 260 270 280 290
280 290 300 310
pF1KB9 NVAKV--PASPT--LSSSAESPEGASLYDEVRAG--------------ATSGAGGGSRL-
. . .::. ....:. . .::.: :: :.: :.: :
NP_003 LFGGLGTSSSPVGGVGAGADPSDPLGLYEEEGAGCSPDAPSLSGRSSAASSPAAGRSPAD
300 310 320 330 340 350
320 330 340 350 360 370
pF1KB9 YYSFKNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGSSGEDADDLMFDLSLNFSQ
. .. .. : : . : : ::: . : ::::::..::.:. : ::: :.:: :.
NP_003 HRGYASLRAASPAPSSAP--SHASSSASSHSSSSSSSGSSSSDDEFEDDL---LDLNPSS
360 370 380 390 400 410
380 390 400 410 420 430
pF1KB9 SAHSASEQQLGGGAAAGNLSLSLVDKDLD-SFSEGSLGSHFEFPDYCTPELSEMIAGDWL
. .: : ::. ... : .:.::: .: :: :::::::::::::.::::.::::
NP_003 NFESMS---LGSFSSS-----SALDRDLDFNFEPGS-GSHFEFPDYCTPEVSEMISGDWL
420 430 440 450 460
440
pF1KB9 EANFSDLVFTY
:...:.:::::
NP_003 ESSISNLVFTY
470
>>NP_008874 (OMIM: 601947) transcription factor SOX-12 [ (315 aa)
initn: 820 init1: 562 opt: 586 Z-score: 385.7 bits: 80.0 E(85289): 9.6e-15
Smith-Waterman score: 720; 39.6% identity (55.1% similar) in 412 aa overlap (31-441:22-315)
10 20 30 40 50 60
pF1KB9 MVQQAESLEAESNLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWS
:. .: :::: :::::::::::::::
NP_008 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWS
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 KIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRP
. ::::::.: :::::::::::::.::..:.:::::::.:::::::::::::::::::::
NP_008 QHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRP
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 RKKPKMDPS-AKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAK
::: : :. :.: . : ::..::.. . : . :. .: .
NP_008 RKKSKGAPAKARP---RPP------------GGSGGGSRLKPGP-------QLPGRGGRR
120 130 140
180 190 200 210 220 230
pF1KB9 AGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQI
: :: : ::::. .:::.:::.:: :..
NP_008 A-AG-----------------------GPLGGGAAAP--------EDDDEDDDEEL-LEV
150 160 170
240 250 260 270 280 290
pF1KB9 KQEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLYDEVRA
. :.. ::.. : :. :::. . ..:: ::
NP_008 R--------------LVETPGRE----LWRM----VPAGRAARGQAE-----------RA
180 190 200
300 310 320 330 340 350
pF1KB9 GATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGSSGEDAD
. :: :.. : : ::. :.. .... ::.
NP_008 QGPSGEGAA------------------AAAAASPTPSED-EEPEEEEEEAAAAEEGEEET
210 220 230 240
360 370 380 390 400 410
pF1KB9 DLMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSHFEFPDYCTP
. ::.: . .: : :. :. : .:.: : .. : :::::::::::
NP_008 VASGEESLGFLS--------RLPPGPAG--LDCSALDRDPD-LQPPSGTSHFEFPDYCTP
250 260 270 280 290
420 430 440
pF1KB9 ELSEMIAGDWLEANFSDLVFTY
:..::::::: ....::::::
NP_008 EVTEMIAGDWRPSSIADLVFTY
300 310
>>NP_005977 (OMIM: 602148) transcription factor SOX-1 [H (391 aa)
initn: 393 init1: 393 opt: 433 Z-score: 289.1 bits: 62.5 E(85289): 2.3e-09
Smith-Waterman score: 466; 33.1% identity (58.8% similar) in 323 aa overlap (43-353:45-325)
20 30 40 50 60 70
pF1KB9 NLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSP
:. . ..:::::::::::. .:::. ...:
NP_005 GAQAPTNLSGPAGAGGGGGGGGGGGGGGGAKANQDRVKRPMNAFMVWSRGQRRKMAQENP
20 30 40 50 60 70
80 90 100 110 120 130
pF1KB9 DMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPK-MDPSAK
:::.::::::: .::.....:: ::: ::.::: :: ..::::::::.: : . . :
NP_005 KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDK
80 90 100 110 120 130
140 150 160 170 180 190
pF1KB9 PSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAKAGAGKAAQSGDY
: . . ..:::::.... :.: .. :.. .:..: :. ::.: : .:
NP_005 YSLAGGLLAAGAGGGGAAVAMGVG---VGVGAAAVGQRLESP---GGAAGGGYAHVNGWA
140 150 160 170 180
200 210 220 230 240 250
pF1KB9 GGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQIKQEPDEEDEEP-
.:: ::. .....:. .. : :: :.: .:
NP_005 NGAYP----GSV----AAAAAAAAMMQ---------------EAQLAYGQHPGAGGAHPH
190 200 210 220
260 270 280 290 300
pF1KB9 -------PHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSS---AESPEGASLYDEVRAG
::. .: . :: ..::... . :: .:. . :: : . :.
NP_005 AHPAHPHPHHPHAHPHNPQP---MHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAA
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 ATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGSSGEDADD
:...:.::.. :. : : . ::: .... .: .. :::
NP_005 AAAAAAGGAH----------QNSAVAAAAAAAAASSGALGALGSLVKSEPSGSPPAPAHS
290 300 310 320 330
370 380 390 400 410 420
pF1KB9 LMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSHFEFPDYCTPE
NP_005 RAPCPGDLREMISMYLPAGEGGDPAAAAAAAAQSRLHSLPQHYQGAGAGVNGTVPLTHI
340 350 360 370 380 390
>>NP_009015 (OMIM: 604974) transcription factor SOX-21 [ (276 aa)
initn: 457 init1: 401 opt: 415 Z-score: 279.9 bits: 60.3 E(85289): 7.5e-09
Smith-Waterman score: 444; 43.2% identity (67.0% similar) in 185 aa overlap (48-211:7-188)
20 30 40 50 60 70
pF1KB9 ALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSPDMHNA
:.:::::::::::. .:::. ...: :::.
NP_009 MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNS
10 20 30
80 90 100 110 120 130
pF1KB9 EISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPKM----DPSAKP-
::::::: .::.: .::: ::: ::.::: :: ..::::::::.::: : : :
NP_009 EISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPV
40 50 60 70 80 90
140 150 160 170
pF1KB9 -------SASQSPEKSAAGGGGGSAGGG-------AGGAKTSKGSSKKCGKLKAPAAAGA
. .. : .:..: ..:::: :. :.. ... ... : .:.:
NP_009 PYGLGGVADAEHPALKAGAGLHAGAGGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAA
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB9 KAGAGKAAQSGDYGGAGDDYVLGS--LRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQ
:.:. :: .:. . : ::: ..:.:..:
NP_009 AAAAAAAAAAGSPYSLLD---LGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAAAAA
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB9 LQIKQEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLYDE
NP_009 AAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYA
220 230 240 250 260 270
>>NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapiens] (233 aa)
initn: 400 init1: 400 opt: 412 Z-score: 279.0 bits: 59.9 E(85289): 8.4e-09
Smith-Waterman score: 412; 52.1% identity (74.8% similar) in 119 aa overlap (49-162:49-160)
20 30 40 50 60 70
pF1KB9 LDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAE
.:::::::::::. .::.. .:.: :::.:
NP_008 ATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSE
20 30 40 50 60 70
80 90 100 110 120 130
pF1KB9 ISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPKMDPSAKPSASQSP
:::::: .::.: ..:: ::..::.::: .:. ::::::::::.: : :.. .:
NP_008 ISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAK-------SSGAGP
80 90 100 110 120 130
140 150 160 170 180 190
pF1KB9 EKSAAGGGGGSAGG---GAGGAKT--SKGSSKKCGKLKAPAAAGAKAGAGKAAQSGDYGG
. . : :. ..:: : : : : :.:
NP_008 SRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCS
140 150 160 170 180 190
>>NP_003097 (OMIM: 184429,189960,206900) transcription f (317 aa)
initn: 448 init1: 370 opt: 410 Z-score: 276.0 bits: 59.7 E(85289): 1.2e-08
Smith-Waterman score: 410; 53.4% identity (76.3% similar) in 118 aa overlap (43-155:35-152)
20 30 40 50 60 70
pF1KB9 NLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSP
:.. ..:::::::::::. .:::. ...:
NP_003 METELKPPGPQQTSGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENP
10 20 30 40 50 60
80 90 100 110 120
pF1KB9 DMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPKM----DP
:::.::::::: .::.:...:: ::: ::.::: :: ..::::::::.: : :
NP_003 KMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SAKPSASQSPE-KSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAKAGAGKAAQ
. :.. .: .: :.: : .:: :::
NP_003 YTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQLGYPQHP
130 140 150 160 170 180
>>NP_004180 (OMIM: 604747) transcription factor SOX-14 [ (240 aa)
initn: 429 init1: 400 opt: 400 Z-score: 271.4 bits: 58.5 E(85289): 2.2e-08
Smith-Waterman score: 400; 66.2% identity (88.8% similar) in 80 aa overlap (46-125:5-84)
20 30 40 50 60 70
pF1KB9 REALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSPDMH
: :::::::::::::. .:::. ...: ::
NP_004 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMH
10 20 30
80 90 100 110 120 130
pF1KB9 NAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPKMDPSAKPSAS
:.::::::: .::.:...:: :.: ::.::: .:: ..::::::::.:::
NP_004 NSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVF
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB9 QSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAKAGAGKAAQSGDYGGAG
NP_004 PLPYLGDTDPLKAAGLPVGASDGLLSAPEKARAFLPPASAPYSLLDPAQFSSSAIQKMGE
100 110 120 130 140 150
>>NP_113627 (OMIM: 612202) transcription factor SOX-7 [H (388 aa)
initn: 483 init1: 377 opt: 400 Z-score: 268.6 bits: 58.7 E(85289): 3.2e-08
Smith-Waterman score: 417; 30.4% identity (51.4% similar) in 385 aa overlap (18-395:18-360)
10 20 30 40 50 60
pF1KB9 MVQQAESLEAESNLPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWS
:::.: .. . :: :. . : : . ..:.:::::::::.
NP_113 MASLLGAYPWPEGLECPALDAELSD--GQSPPAVPRPPGD--KGSESRIRRPMNAFMVWA
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 KIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRP
: ::... :.::.::::.:: ::: :: : :.: :.. :::::::.:: :::.:::::
NP_113 KDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 RKKPKMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAKA
:.: . .. : . : :. . .: : : :...
NP_113 RRKKQ---------AKRLCKRVDPGFLLSSLSRDQNALPEKRS-------------GSRG
120 130 140 150
190 200 210 220 230
pF1KB9 GAGKAAQSGDYG-GAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQI
. :. . :.:. :.. . : . . .::::.: . .: :..
NP_113 ALGEKEDRGEYSPGTALPSLRGCYHEGPAGGGGGGTPSS---VDTYPYGLPTPPEMSPLD
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB9 KQEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVPA----SPTLSSSA--ESPEGASL
::.. : :. : . : . :. .:. : :.: : .:: :.:.
NP_113 VLEPEQTFFSSPCQEEHGHPRRIPHLPGHPYSPEYAPSPLHCSHPLGSLALGQSP-GVSM
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB9 YDEVRAGATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGS
.. : . : : . :. ... . : :. : :. . . :. :
NP_113 MSPVPGCPPSPAYYSPATYHPLHSNLQAHLGQLSPPPEHPGFDALDQLSQVELLG-----
280 290 300 310 320
360 370 380 390 400 410
pF1KB9 SGEDADDLMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSHFEF
: : :: :: ::. :. : .:.. .: :
NP_113 ---DMDRNEFDQYLNTPGHPDSAT----GAMALSGHVPVSQVTPTGPTETSLISVLADAT
330 340 350 360 370
420 430 440
pF1KB9 PDYCTPELSEMIAGDWLEANFSDLVFTY
NP_113 ATYYNSYSVS
380
>>NP_005625 (OMIM: 300123,312000,313430) transcription f (446 aa)
initn: 373 init1: 373 opt: 400 Z-score: 267.8 bits: 58.7 E(85289): 3.5e-08
Smith-Waterman score: 405; 33.5% identity (53.9% similar) in 310 aa overlap (44-349:134-372)
20 30 40 50 60 70
pF1KB9 LPREALDTEEGEFMACSPVALDESDPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSPD
: . ..:::::::::::. .:::. ..:
NP_005 GGAGKSSANAAGGANSGGGSSGGASGGGGGTDQDRVKRPMNAFMVWSRGQRRKMALENPK
110 120 130 140 150 160
80 90 100 110 120
pF1KB9 MHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPKM----DPS
:::.::::::: ::.: :.:: ::: ::.::: :: .:::::::::.: : :
NP_005 MHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKTLLKKDKY
170 180 190 200 210 220
130 140 150 160 170 180
pF1KB9 AKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCGKLKAPAAAGAKAGAGKAAQSG
. ::. : :..:...:..: : :::.. .:.:.
NP_005 SLPSGLLPP--------GAAAAAAAAAA--------------AAAAASSPVGVGQRL---
230 240 250
190 200 210 220 230 240
pF1KB9 DYGGAGDDYVLGSLRVSGSGGGGAGKTVKCVFLDEDDDDDDDDDELQLQIKQEPDEEDEE
: :. .:.: ..:: . :. :: : :. .
NP_005 ------DTYT----HVNG-WANGAYSLVQ----------------EQLGYAQPPSMSSP-
260 270 280 290
250 260 270 280 290 300
pF1KB9 PPHQQLLQPPGQQPSQLLRRYNVAKVPASPTLSSSAESPEGASLYDEVRAGATSGAGGGS
:: ::. : ..::..: . :: . : ::. : .: :.:....: :.
NP_005 PP------PPALPP---MHRYDMAGLQYSPMM------PPGAQSYMNVAAAAAAASGYGG
300 310 320 330
310 320 330 340 350 360
pF1KB9 RLYYSFKNITKQHPPPLAQPALSPASSRSVSTSSSSSSGSSSGSSGEDADDLMFDLSLNF
. . . ::: . :.. .... : . ::
NP_005 MAPSATAAAAAAYGQ---QPATAAAAAAAAAAMSLGPMGSVVKSEPSSPPPAIASHSQRA
340 350 360 370 380 390
370 380 390 400 410 420
pF1KB9 SQSAHSASEQQLGGGAAAGNLSLSLVDKDLDSFSEGSLGSHFEFPDYCTPELSEMIAGDW
NP_005 CLGDLRDMISMYLPPGGDAADAASPLPGGRLHGVHQHYQGAGTAVNGTVPLTHI
400 410 420 430 440
441 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:57:27 2016 done: Fri Nov 4 17:57:28 2016
Total Scan time: 9.420 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]