Result of FASTA (omim) for
pF1KB9651
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9651, 240 aa
1>>>pF1KB9651 240 - 240 aa - 240 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0622+/-0.000315; mu= 7.5388+/- 0.020
mean_var=132.9937+/-27.790, 0's: 0 Z-trim(120.5): 195 B-trim: 281 in 1/56
Lambda= 0.111214
statistics sampled from 35568 (35774) to 35568 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.419), width: 16
Scan time: 7.430
The best scores are: opt bits E(85289)
NP_004180 (OMIM: 604747) transcription factor SOX- ( 240) 1655 276.0 4e-74
NP_009015 (OMIM: 604974) transcription factor SOX- ( 276) 664 117.1 3.3e-26
NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 601 107.0 4e-23
NP_005977 (OMIM: 602148) transcription factor SOX- ( 391) 602 107.2 4.2e-23
NP_005625 (OMIM: 300123,312000,313430) transcripti ( 446) 555 99.7 8.7e-21
NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 474 86.5 4.3e-17
NP_071899 (OMIM: 610928,613674) transcription fact ( 414) 435 80.4 5.2e-15
NP_060889 (OMIM: 137940,601618,607823) transcripti ( 384) 414 77.1 5e-14
NP_113627 (OMIM: 612202) transcription factor SOX- ( 388) 408 76.1 9.9e-14
NP_003131 (OMIM: 400044,400045,480000) sex-determi ( 204) 402 74.9 1.2e-13
NP_000337 (OMIM: 114290,608160,616425) transcripti ( 509) 405 75.7 1.7e-13
NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 404 75.5 1.7e-13
NP_003099 (OMIM: 600898,615866) transcription fact ( 441) 400 74.8 2.7e-13
NP_008874 (OMIM: 601947) transcription factor SOX- ( 315) 394 73.8 4e-13
NP_003098 (OMIM: 184430) transcription factor SOX- ( 474) 394 73.9 5.5e-13
NP_008872 (OMIM: 602229,609136,611584,613266) tran ( 466) 391 73.4 7.5e-13
XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621) 349 66.8 1e-10
NP_005677 (OMIM: 604748) transcription factor SOX- ( 622) 349 66.8 1e-10
NP_821078 (OMIM: 604975,616803) transcription fact ( 377) 339 65.0 2.1e-10
XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415) 339 65.0 2.2e-10
NP_001248343 (OMIM: 604975,616803) transcription f ( 642) 339 65.2 3.2e-10
XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715) 339 65.2 3.4e-10
XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715) 339 65.2 3.4e-10
XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715) 339 65.2 3.4e-10
XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715) 339 65.2 3.4e-10
XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716) 339 65.2 3.4e-10
NP_001317714 (OMIM: 604975,616803) transcription f ( 728) 339 65.2 3.5e-10
XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729) 339 65.2 3.5e-10
NP_694534 (OMIM: 604975,616803) transcription fact ( 750) 339 65.2 3.6e-10
XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750) 339 65.2 3.6e-10
XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751) 339 65.2 3.6e-10
XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751) 339 65.2 3.6e-10
XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751) 339 65.2 3.6e-10
XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751) 339 65.2 3.6e-10
XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751) 339 65.2 3.6e-10
XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751) 339 65.2 3.6e-10
XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751) 339 65.2 3.6e-10
XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751) 339 65.2 3.6e-10
XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751) 339 65.2 3.6e-10
NP_001248344 (OMIM: 604975,616803) transcription f ( 753) 339 65.2 3.6e-10
XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754) 339 65.2 3.6e-10
NP_008871 (OMIM: 604975,616803) transcription fact ( 763) 339 65.2 3.6e-10
XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764) 339 65.2 3.6e-10
XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792) 339 65.2 3.7e-10
XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793) 339 65.2 3.7e-10
NP_001139283 (OMIM: 607257) transcription factor S ( 801) 327 63.3 1.4e-09
NP_059978 (OMIM: 607257) transcription factor SOX- ( 804) 327 63.3 1.4e-09
NP_201583 (OMIM: 607257) transcription factor SOX- ( 808) 327 63.3 1.4e-09
NP_001139291 (OMIM: 607257) transcription factor S ( 841) 327 63.3 1.5e-09
XP_005265860 (OMIM: 606698) PREDICTED: transcripti ( 448) 317 61.5 2.7e-09
>>NP_004180 (OMIM: 604747) transcription factor SOX-14 [ (240 aa)
initn: 1655 init1: 1655 opt: 1655 Z-score: 1451.8 bits: 276.0 E(85289): 4e-74
Smith-Waterman score: 1655; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 AKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFPLPYLGDTDPLKAAGLPVGASDGLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFPLPYLGDTDPLKAAGLPVGASDGLLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 APEKARAFLPPASAPYSLLDPAQFSSSAIQKMGEVPHTLATGALPYASTLGYQNGAFGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 APEKARAFLPPASAPYSLLDPAQFSSSAIQKMGEVPHTLATGALPYASTLGYQNGAFGSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SCPSQHTHTHPSPTNPGYVVPCNCTAWSASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SCPSQHTHTHPSPTNPGYVVPCNCTAWSASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
190 200 210 220 230 240
>>NP_009015 (OMIM: 604974) transcription factor SOX-21 [ (276 aa)
initn: 1046 init1: 627 opt: 664 Z-score: 591.6 bits: 117.1 E(85289): 3.3e-26
Smith-Waterman score: 965; 58.0% identity (73.3% similar) in 281 aa overlap (1-236:1-272)
10 20 30 40 50 60
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDE
:::: ::.::::::::::::.::::::::::::::::::::::::::::.:.::::.:::
NP_009 MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDE
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 AKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFPLPY-LG---DTD-P-LKA-AGLPVG
::::::.:::::::::::::::::.:::::...::.:: :: :.. : ::: ::: .:
NP_009 AKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGGVADAEHPALKAGAGLHAG
70 80 90 100 110 120
120 130 140
pF1KB9 ASDGL-----LSAPEKA---------RAFLPPASA-------------PYSLLDPAQFSS
:. :: :. :::: :.:.: ..: :::::: ..
NP_009 AGGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGS---
130 140 150 160 170
150 160 170 180 190
pF1KB9 SAIQKMGEVPHTLATGALPYASTLGYQN---GAF-GSLSCPSQ-------HTHTHPSPTN
::.:. . ...:::::.::: . ::: :. . . :::.:::: :
NP_009 ----KMAEISSS--SSGLPYASSLGYPTAGAGAFHGAAAAAAAAAAAAGGHTHSHPSPGN
180 190 200 210 220 230
200 210 220 230 240
pF1KB9 PGYVVPCNCTAWSASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
:::..::::.:: . ::::.::::.::: : .::: .:.
NP_009 PGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL
240 250 260 270
>>NP_003097 (OMIM: 184429,189960,206900) transcription f (317 aa)
initn: 626 init1: 574 opt: 601 Z-score: 536.1 bits: 107.0 E(85289): 4e-23
Smith-Waterman score: 601; 49.1% identity (69.1% similar) in 220 aa overlap (6-216:39-254)
10 20 30
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHN
:..:::::::::::::::::::::::::::
NP_003 LKPPGPQQTSGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHN
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFP
::::::::::::::::.::::.::::::::: ::::::::::::::: :.:.:::.:..:
NP_003 SEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLP
70 80 90 100 110 120
100 110 120 130 140
pF1KB9 LPYLGDTDPLKAAGLPVGASDGL-LSAPEKARAFLPPAS-APYSLLD-----PAQFSSSA
:. :.:. :::. : .. . : . : . ::... : . . .:
NP_003 GGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNA
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB9 IQKMGEVP-HTLATGALPYASTLGYQNGAFGSLSCPSQHTHTHPSPTNPGYVVPC-NCTA
: : ..:: : : . :. :: :. .. .. . .::... . ..
NP_003 HGAAQMQPMHRYDVSALQYNSMTSSQTYMNGS---PT-YSMSYSQQGTPGMALGSMGSVV
190 200 210 220 230 240
210 220 230 240
pF1KB9 WSASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
: .. .:::
NP_003 KSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHYQSGPVP
250 260 270 280 290 300
>>NP_005977 (OMIM: 602148) transcription factor SOX-1 [H (391 aa)
initn: 590 init1: 563 opt: 602 Z-score: 535.7 bits: 107.2 E(85289): 4.2e-23
Smith-Waterman score: 602; 46.5% identity (64.7% similar) in 241 aa overlap (6-239:49-285)
10 20 30
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHN
:..:::::::::::::::::::::::::::
NP_005 PTNLSGPAGAGGGGGGGGGGGGGGGAKANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHN
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB9 SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFP
::::::::::::..:::::::.::::::::: ::::::::::::::: :.:::::.: .
NP_005 SEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLA
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB9 LPYLGDTDPLKAAGLPVGASDGLLSAPEKARAFLPPASAPYSLLDPAQFSSSAIQKMGEV
:. .:.. .:.. :. .: : : ..: . ....: : :
NP_005 GGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAAGGGYAHVNGWANGAYP--GSV
140 150 160 170 180 190
160 170 180 190 200
pF1KB9 PHTLATGALPYASTLGY--QNGAFGSL-----SCPSQHTHTHPSPTNPGYVVPCNCTAWS
. :..:. . :.: . :: :. . : : : : : :: . . : .
NP_005 AAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHPH-HPHAHPHNPQPMHRYDMGALQ
200 210 220 230 240 250
210 220 230 240
pF1KB9 ASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
: .. .:. :. ::..: :.:
NP_005 YSPISNSQGYMSASPSGYGGL-PYGAAAAAAAAAGGAHQNSAVAAAAAAAAASSGALGAL
260 270 280 290 300 310
NP_005 GSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAAAAAAAAQSRLHSLPQH
320 330 340 350 360 370
>>NP_005625 (OMIM: 300123,312000,313430) transcription f (446 aa)
initn: 541 init1: 541 opt: 555 Z-score: 494.1 bits: 99.7 E(85289): 8.7e-21
Smith-Waterman score: 555; 45.6% identity (67.3% similar) in 217 aa overlap (6-215:137-352)
10 20 30
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHN
:..::::::::::::::::::: :::::::
NP_005 GKSSANAAGGANSGGGSSGGASGGGGGTDQDRVKRPMNAFMVWSRGQRRKMALENPKMHN
110 120 130 140 150 160
40 50 60 70 80 90
pF1KB9 SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFP
:::::::::.::::..:::::.::::::::: ::::.:::::::::: :.:::::.: .:
NP_005 SEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKTLLKKDKYSLP
170 180 190 200 210 220
100 110 120 130 140 150
pF1KB9 LPYL--GDTDPLKAAGLPVGASDGLLSAPEKARAFLPP---ASAPYSLLDPAQFSSSAIQ
: : . ::. ..:... ... .. .. :.. :::.. :.. .
NP_005 SGLLPPGAAAAAAAAAAAAAAASSPVGVGQRLDTYTHVNGWANGAYSLVQE-QLGYAQPP
230 240 250 260 270 280
160 170 180 190 200
pF1KB9 KMGEVPHTLATGALPYASTLGYQNGAFGSLSCPSQHTHTHPSPTNPGY--VVPCNCTAWS
.:. : : . . : : . . . : . . . . :: ..: .: .
NP_005 SMSSPPPPPALPPMHRYDMAGLQYSPMMPPGAQSYMNVAAAAAAASGYGGMAPSATAAAA
290 300 310 320 330 340
210 220 230 240
pF1KB9 ASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
:. : :
NP_005 AAYGQQPATAAAAAAAAAAMSLGPMGSVVKSEPSSPPPAIASHSQRACLGDLRDMISMYL
350 360 370 380 390 400
>>NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapiens] (233 aa)
initn: 465 init1: 445 opt: 474 Z-score: 427.9 bits: 86.5 E(85289): 4.3e-17
Smith-Waterman score: 474; 48.1% identity (71.2% similar) in 156 aa overlap (4-159:45-192)
10 20 30
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKM
: ...::::::::::: .:::.:::.::::
NP_008 EPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKM
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB9 HNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYV
:::::::::::.::::.: ::::...:::::::.:....:::::::::: :. .
NP_008 HNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKS-----SGA
80 90 100 110 120
100 110 120 130 140 150
pF1KB9 FPLPYLGDTDPLKAAGLPVGASDGLLSAPEKARAFLPPASAPYSLLDPAQFSSSAIQKMG
: :. :.: :. . . : .. .. ::. . : :....:: . .
NP_008 GP-SRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYL--PGSYGSSHCKLEA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB9 EVPHTLATGALPYASTLGYQNGAFGSLSCPSQHTHTHPSPTNPGYVVPCNCTAWSASTLQ
: .:
NP_008 PSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL
190 200 210 220 230
>>NP_071899 (OMIM: 610928,613674) transcription factor S (414 aa)
initn: 409 init1: 388 opt: 435 Z-score: 390.5 bits: 80.4 E(85289): 5.2e-15
Smith-Waterman score: 435; 37.7% identity (60.3% similar) in 247 aa overlap (2-236:62-294)
10 20 30
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENP
.: ..:.:::::::::.. .:...::.::
NP_071 WAESLSPIGDMKVKGEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERKRLAQQNP
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB9 KMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDR
.::.:.:: :: :: :. :::::...::.:::.:::..::.:::::::. . .:. .
NP_071 DLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ--VKRLK
100 110 120 130 140
100 110 120 130 140
pF1KB9 YVFPLPYLGDTDPLKAAGLPVG---ASDGL-LSAPEKARAFLPPASAPYSLLDPAQFSS-
: : ..: :: : : : ::: :. ::.. : ::. : :: : . .
NP_071 RVEGGFLHGLAEPQAAALGPEGGRVAMDGLGLQFPEQG--F--PAGPP--LLPPHMGGHY
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB9 SAIQKMGEVPHTLATGALPYASTL-GYQ-NGAFGSL----SCPSQHTHTHPSPTNPGYVV
:..: : : .: : : . . :: . .::. :... . .. :.
NP_071 RDCQSLGAPPLDGYPLPTPDTSPLDGVDPDPAFFAAPMPGDCPAAGTYSYAQVSD--YAG
210 220 230 240 250 260
210 220 230 240
pF1KB9 PCNCTAWSAST-LQPPVAYILFPGMTKTGIDPYSSAHATAM
: . : : : : .::. . : :. :
NP_071 PPEPPAGPMHPRLGPEPAGPSIPGL----LAPPSALHVYYGAMGSPGAGGGRGFQMQPQH
270 280 290 300 310
NP_071 QHQHQHQHHPPGPGQPSPPPEALPCRDGTDPSQPAELLGEVDRTEFEQYLHFVCKPEMGL
320 330 340 350 360 370
>>NP_060889 (OMIM: 137940,601618,607823) transcription f (384 aa)
initn: 434 init1: 367 opt: 414 Z-score: 372.8 bits: 77.1 E(85289): 5e-14
Smith-Waterman score: 433; 36.5% identity (59.2% similar) in 260 aa overlap (8-232:85-330)
10 20 30
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSE
:.:::::::::.. .:...::.:: .::.
NP_060 QRSPPRSPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAV
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB9 ISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFP--
.:: :: :: :. :::::...::.:::.::...::.:::::::: . .: : . :
NP_060 LSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQA--RKARRLEPGL
120 130 140 150 160 170
100 110 120 130
pF1KB9 -LPYLGDT----DPLKAAGL---------PVGAS-DGL-LSAPEKA---------RAFLP
:: :. .:. ::. :.:: ::: : .::.. ::.:
NP_060 LLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEFDGLGLPTPERSPLDGLEPGEAAFFP
180 190 200 210 220 230
140 150 160 170 180
pF1KB9 PASAPYSL-LDP--AQFSSSAIQK-----MGEVPHTLATGALPYASTLGYQNGAFGSLSC
: .:: . : : : .. . ... .: .: . : . : :. :. . .:.:.
NP_060 PPAAPEDCALRPFRAPYAPTELSRDPGGCYG-APLAEALRTAPPAAPLA--GLYYGTLGT
240 250 260 270 280
190 200 210 220 230 240
pF1KB9 PSQHTHTHPSPTNPGYVVPCNCTAWSASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
:. .:.: .: .: :: : : : :. . : .: :
NP_060 PG----PYPGPLSPPPEAP---PLESAEPLGP--AADLWADVDLTEFDQYLNCSRTRPDA
290 300 310 320 330 340
NP_060 PGLPYHVALAKLGPRAMSCPEESSLISALSDASSAVYYSACISG
350 360 370 380
>>NP_113627 (OMIM: 612202) transcription factor SOX-7 [H (388 aa)
initn: 390 init1: 369 opt: 408 Z-score: 367.5 bits: 76.1 E(85289): 9.9e-14
Smith-Waterman score: 408; 40.2% identity (59.8% similar) in 204 aa overlap (8-198:45-240)
10 20 30
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSE
:.:::::::::.. .:...: .:: .::.:
NP_113 ECPALDAELSDGQSPPAVPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAE
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB9 ISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKP--KNLLKKDRYVFP
.:: :: :: :. ..::::.:::.::: :::...:.:::::::: : : :. :
NP_113 LSKMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFL
80 90 100 110 120 130
100 110 120 130 140
pF1KB9 LPYLG-DTD--PLKAAGLPVGASDGLLSAPEKARAFLPPASAPYSLLD-----PAQFSSS
: :. : . : : .: : : :. : :. :..: :: :: ...
NP_113 LSSLSRDQNALPEKRSG-----SRGALGEKED-RGEYSPGTALPSLRGCYHEGPAGGGGG
140 150 160 170 180
150 160 170 180 190 200
pF1KB9 AI-QKMGEVPHTLATGALPYASTLGYQNGAFGSLSCPSQHTHTHPS--PTNPGYVVPCNC
. ... :. : : : : : . .: : :. : :: : ::.
NP_113 GTPSSVDTYPYGLPTP--PEMSPLDVLEPEQTFFSSPCQEEHGHPRRIPHLPGHPYSPEY
190 200 210 220 230 240
210 220 230 240
pF1KB9 TAWSASTLQPPVAYILFPGMTKTGIDPYSSAHATAM
NP_113 APSPLHCSHPLGSLALGQSPGVSMMSPVPGCPPSPAYYSPATYHPLHSNLQAHLGQLSPP
250 260 270 280 290 300
>>NP_003131 (OMIM: 400044,400045,480000) sex-determining (204 aa)
initn: 404 init1: 386 opt: 402 Z-score: 366.3 bits: 74.9 E(85289): 1.2e-13
Smith-Waterman score: 402; 62.2% identity (88.9% similar) in 90 aa overlap (6-95:58-146)
10 20 30
pF1KB9 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHN
:..:::::::.:::: :::::: :::.:.:
NP_003 LRRSSSFLCTESCNSKYQCETGENSKGNVQDRVKRPMNAFIVWSRDQRRKMALENPRMRN
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB9 SEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYVFP
:::::.:: .::.:.:::: :...::..:.:.: ...:.:::::::: : .: :. ..:
NP_003 SEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAK-MLPKNCSLLP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB9 LPYLGDTDPLKAAGLPVGASDGLLSAPEKARAFLPPASAPYSLLDPAQFSSSAIQKMGEV
NP_003 ADPASVLCSEVQLDNRLYRDDCTKATHSRMEHQLGHLPPINAASSPQQRDRYSHWTKL
150 160 170 180 190 200
240 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:58:02 2016 done: Fri Nov 4 17:58:03 2016
Total Scan time: 7.430 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]