FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9657, 202 aa
  1>>>pF1KB9657 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9260+/-0.000927; mu= 5.9165+/- 0.057
 mean_var=315.4300+/-64.106, 0's: 0 Z-trim(116.5): 51  B-trim: 0 in 0/52
 Lambda= 0.072214
 statistics sampled from 17094 (17136) to 17094 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.526), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS5367.1 TWIST1 gene_id:7291|Hs108|chr7          ( 202) 1356 153.3 9.1e-38
CCDS46558.1 TWIST2 gene_id:117581|Hs108|chr2       ( 160)  655 80.2 7.7e-16


>>CCDS5367.1 TWIST1 gene_id:7291|Hs108|chr7               (202 aa)
 initn: 1356 init1: 1356 opt: 1356  Z-score: 791.5  bits: 153.3 E(32554): 9.1e-38
Smith-Waterman score: 1356; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KB9 MMQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MMQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GGGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQTQRVMANVRERQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GGGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQTQRVMANVRERQR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAH
              130       140       150       160       170       180

              190       200  
pF1KB9 ERLSYAFSVWRMEGAWSMSASH
       ::::::::::::::::::::::
CCDS53 ERLSYAFSVWRMEGAWSMSASH
              190       200  

>>CCDS46558.1 TWIST2 gene_id:117581|Hs108|chr2            (160 aa)
 initn: 744 init1: 640 opt: 655  Z-score: 397.8  bits: 80.2 E(32554): 7.7e-16
Smith-Waterman score: 750; 66.7% identity (75.6% similar) in 201 aa overlap (2-202:1-160)

               10        20        30        40        50        60
pF1KB9 MMQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGV
        :.. :::::::.: ::..:::: .:: :   :: ::::: :..:.              
CCDS46  MEEGSSSPVSPVD-SLGTSEEELERQ-P---KRFGRKRRYSKKSS--------------
                10         20            30        40              

               70        80        90       100       110       120
pF1KB9 GGGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQTQRVMANVRERQR
           : :::. ::::::                  :. : ::.::::.::..::::::::
CCDS46 ----EDGSPTPGKRGKK------------------GSPSAQSFEELQSQRILANVRERQR
                   50                          60        70        

              130       140       150       160       170       180
pF1KB9 TQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAH
       :::::::::::::::::::::::::::::::::::::::::::::::.:.::.:::::::
CCDS46 TQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAH
       80        90       100       110       120       130        

              190       200  
pF1KB9 ERLSYAFSVWRMEGAWSMSASH
       ::::::::::::::::::::::
CCDS46 ERLSYAFSVWRMEGAWSMSASH
      140       150       160




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:19:56 2016 done: Sat Nov  5 14:19:56 2016
 Total Scan time:  1.770 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]