FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9673, 264 aa
  1>>>pF1KB9673 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6805+/-0.000903; mu= 5.0726+/- 0.055
 mean_var=144.1021+/-28.640, 0's: 0 Z-trim(111.3): 4  B-trim: 139 in 1/49
 Lambda= 0.106841
 statistics sampled from 12252 (12256) to 12252 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.376), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS4002.1 TAF9 gene_id:6880|Hs108|chr5            ( 264) 1714 275.1 3.4e-74
CCDS35340.1 TAF9B gene_id:51616|Hs108|chrX         ( 251) 1317 213.9 8.6e-56


>>CCDS4002.1 TAF9 gene_id:6880|Hs108|chr5                 (264 aa)
 initn: 1714 init1: 1714 opt: 1714  Z-score: 1445.5  bits: 275.1 E(32554): 3.4e-74
Smith-Waterman score: 1714; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB9 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
              190       200       210       220       230       240

              250       260    
pF1KB9 SNALKRKREDDDDDDDDDDDYDNL
       ::::::::::::::::::::::::
CCDS40 SNALKRKREDDDDDDDDDDDYDNL
              250       260    

>>CCDS35340.1 TAF9B gene_id:51616|Hs108|chrX              (251 aa)
 initn: 1365 init1: 831 opt: 1317  Z-score: 1115.1  bits: 213.9 E(32554): 8.6e-56
Smith-Waterman score: 1317; 80.8% identity (92.2% similar) in 255 aa overlap (1-255:1-249)

               10        20        30        40        50        60
pF1KB9 MESGKTASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
       ::::: : ::. :.:: .::::::::::::::::::::::::::::::::::::::::::
CCDS35 MESGKMAPPKNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRY
       ::: .:::::::::::::::::::::::::::::::::.:::::::::::.:::::::::
CCDS35 AKKPNVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CLTAPNYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMSVSTKVGTPM
       :::::::::::: ::. .. ::. :::::::.:.:.:.:::..::  ::.:: .::.:::
CCDS35 CLTAPNYRLKSLIKKGPNQ-GRL-VPRLSVGAVSSKPTTPTIATP--QTVSVPNKVATPM
              130        140        150       160         170      

              190       200       210       220       230       240
pF1KB9 SLTGQRFTVQMPTSQSPAVKASIPATSAVQNVLINPSLIGSKNILITTNMMSSQNTANES
       :.:.::::::.: :::  ::  .:::.::::::::::.:: :::::::::.::::::::.
CCDS35 SVTSQRFTVQIPPSQSTPVKP-VPATTAVQNVLINPSMIGPKNILITTNMVSSQNTANEA
        180       190        200       210       220       230     

              250       260    
pF1KB9 SNALKRKREDDDDDDDDDDDYDNL
        : ::::.:::::.:         
CCDS35 -NPLKRKHEDDDDNDIM       
          240       250        




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:08:34 2016 done: Fri Nov  4 18:08:35 2016
 Total Scan time:  2.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]