FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9681, 140 aa
  1>>>pF1KB9681 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8280+/-0.000842; mu= 13.1897+/- 0.051
 mean_var=51.4158+/-10.382, 0's: 0 Z-trim(104.7): 19  B-trim: 0 in 0/48
 Lambda= 0.178865
 statistics sampled from 8017 (8029) to 8017 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.247), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS48082.1 TRAPPC2 gene_id:6399|Hs108|chrX        ( 140)  960 255.3 9.1e-69
CCDS48083.2 TRAPPC2 gene_id:6399|Hs108|chrX        ( 174)  960 255.3 1.1e-68


>>CCDS48082.1 TRAPPC2 gene_id:6399|Hs108|chrX             (140 aa)
 initn: 960 init1: 960 opt: 960  Z-score: 1348.1  bits: 255.3 E(32554): 9.1e-69
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB9 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP
               70        80        90       100       110       120

              130       140
pF1KB9 IRSSAFDRKVQFLGKKHLLS
       ::::::::::::::::::::
CCDS48 IRSSAFDRKVQFLGKKHLLS
              130       140

>>CCDS48083.2 TRAPPC2 gene_id:6399|Hs108|chrX             (174 aa)
 initn: 960 init1: 960 opt: 960  Z-score: 1346.6  bits: 255.3 E(32554): 1.1e-68
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:35-174)

                                             10        20        30
pF1KB9                               MSGSFYFVIVGHHDNPVFEMEFLPAGKAES
                                     ::::::::::::::::::::::::::::::
CCDS48 KQDRSGLRSTELNVLEYQPLCAVRSHILKTMSGSFYFVIVGHHDNPVFEMEFLPAGKAES
           10        20        30        40        50        60    

               40        50        60        70        80        90
pF1KB9 KDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIR
           70        80        90       100       110       120    

              100       110       120       130       140
pF1KB9 QEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS
          130       140       150       160       170    




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:17:11 2016 done: Fri Nov  4 18:17:12 2016
 Total Scan time:  1.600 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]