Result of FASTA (omim) for
pF1KB9685
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9685, 195 aa
1>>>pF1KB9685 195 - 195 aa - 195 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3567+/-0.000662; mu= 6.0870+/- 0.040
mean_var=573.3322+/-150.711, 0's: 0 Z-trim(114.0): 464 B-trim: 1374 in 1/51
Lambda= 0.053564
statistics sampled from 23063 (23544) to 23063 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.276), width: 16
Scan time: 5.670
The best scores are: opt bits E(85289)
NP_009069 (OMIM: 603973) zinc finger protein 90 [H ( 601) 1337 118.7 1.8e-26
NP_001152765 (OMIM: 603984) zinc finger protein 73 ( 536) 1093 99.8 8.2e-21
XP_006722660 (OMIM: 603984) PREDICTED: zinc finger ( 550) 1093 99.8 8.3e-21
XP_011525901 (OMIM: 603984) PREDICTED: zinc finger ( 550) 1093 99.8 8.3e-21
XP_011525900 (OMIM: 603984) PREDICTED: zinc finger ( 551) 1093 99.8 8.3e-21
XP_005259754 (OMIM: 603984) PREDICTED: zinc finger ( 551) 1093 99.8 8.3e-21
NP_112495 (OMIM: 603975) zinc finger protein 93 [H ( 620) 1043 96.0 1.3e-19
NP_066971 (OMIM: 604756) zinc finger protein 273 [ ( 569) 991 92.0 2e-18
XP_016867177 (OMIM: 604756) PREDICTED: zinc finger ( 569) 991 92.0 2e-18
NP_003420 (OMIM: 603899) zinc finger protein 85 is ( 595) 976 90.8 4.5e-18
NP_066385 (OMIM: 606954) zinc finger protein 253 i ( 499) 972 90.4 5.2e-18
NP_258429 (OMIM: 606957) zinc finger protein 257 i ( 563) 972 90.5 5.4e-18
NP_689839 (OMIM: 603974) zinc finger protein 92 is ( 586) 924 86.8 7.2e-17
NP_001269288 (OMIM: 603989) zinc finger protein 10 ( 852) 899 85.2 3.2e-16
NP_775802 (OMIM: 603982) zinc finger protein 100 [ ( 542) 895 84.5 3.3e-16
NP_001092096 (OMIM: 603980) zinc finger protein 98 ( 572) 889 84.1 4.7e-16
XP_016881605 (OMIM: 603984) PREDICTED: zinc finger ( 504) 884 83.6 5.8e-16
NP_003414 (OMIM: 603972) zinc finger protein 43 is ( 809) 867 82.7 1.7e-15
NP_001243582 (OMIM: 603972) zinc finger protein 43 ( 818) 867 82.7 1.7e-15
NP_001073878 (OMIM: 603981) zinc finger protein 99 ( 864) 862 82.3 2.3e-15
NP_975011 (OMIM: 604768) zinc finger protein 254 i ( 659) 857 81.7 2.7e-15
NP_001258568 (OMIM: 604080) zinc finger protein 13 ( 319) 837 79.5 6e-15
NP_003421 (OMIM: 603971) zinc finger protein 91 is (1191) 841 81.0 8.1e-15
XP_016882697 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
XP_016882702 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
XP_011526559 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
XP_016882701 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
XP_016882703 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
XP_016882699 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
NP_001243578 (OMIM: 603972) zinc finger protein 43 ( 803) 832 80.0 1.1e-14
XP_016882704 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
NP_001243579 (OMIM: 603972) zinc finger protein 43 ( 803) 832 80.0 1.1e-14
XP_016882705 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
XP_016882700 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
NP_001243577 (OMIM: 603972) zinc finger protein 43 ( 803) 832 80.0 1.1e-14
XP_011526561 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
XP_016882698 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
XP_016882696 (OMIM: 603972) PREDICTED: zinc finger ( 803) 832 80.0 1.1e-14
XP_016882746 (OMIM: 603977) PREDICTED: zinc finger (1168) 829 80.1 1.5e-14
NP_009084 (OMIM: 603977) zinc finger protein 208 i (1280) 829 80.1 1.6e-14
XP_016867184 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
XP_016867180 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
XP_016867185 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
XP_016867179 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
XP_016867178 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
XP_016867183 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
XP_016867187 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
XP_016867186 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
XP_016867182 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
XP_016867181 (OMIM: 604756) PREDICTED: zinc finger ( 504) 792 76.5 8e-14
>>NP_009069 (OMIM: 603973) zinc finger protein 90 [Homo (601 aa)
initn: 1337 init1: 1337 opt: 1337 Z-score: 596.2 bits: 118.7 E(85289): 1.8e-26
Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGK
130 140 150 160 170 180
190
pF1KB9 AFNQSSTLATHKKIH
:::::::::::::::
NP_009 AFNQSSTLATHKKIHTGEITCKCEECGKAFNRSSHLTSHKRIHTGEKRYKCEDCGKELKY
190 200 210 220 230 240
>>NP_001152765 (OMIM: 603984) zinc finger protein 737 [H (536 aa)
initn: 1093 init1: 1093 opt: 1093 Z-score: 494.7 bits: 99.8 E(85289): 8.2e-21
Smith-Waterman score: 1093; 81.5% identity (91.8% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
::::.::::::::::::::::::::.::::.:::::::.::::::::.::::::::::::
NP_001 MGPLQFRDVAIEFSLEEWHCLDTAQRNLYRNVMLENYRNLVFLGIVVSKPDLITCLEQGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESV
::.:.:.:::.:. : : :::.:: ::::.::::::: . :::. . ::..:::::::
NP_001 KPLTMKKHEMVANPSVTCSHFARDLWPEQSIKDSFQKVTLRRYENYGHDNLQFKKGCESV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGK
:: :::::::::::: ::.::::.:::: :::: : :::::::::: :::::::::::::
NP_001 DECKVHKRGYNGLNQYLTTTQSKIFQCDKYVKVIHKFSNSNRHKIRHTGKKPFKCIECGK
130 140 150 160 170 180
190
pF1KB9 AFNQSSTLATHKKIH
::::::::.::::::
NP_001 AFNQSSTLTTHKKIHTGEKPFKCEECGKAFNWSSHLTTHKRIHTGEKRYKCEDCGKAFSR
190 200 210 220 230 240
>>XP_006722660 (OMIM: 603984) PREDICTED: zinc finger pro (550 aa)
initn: 1093 init1: 1093 opt: 1093 Z-score: 494.6 bits: 99.8 E(85289): 8.3e-21
Smith-Waterman score: 1093; 81.5% identity (91.8% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
::::.::::::::::::::::::::.::::.:::::::.::::::::.::::::::::::
XP_006 MGPLQFRDVAIEFSLEEWHCLDTAQRNLYRNVMLENYRNLVFLGIVVSKPDLITCLEQGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESV
::.:.:.:::.:. : : :::.:: ::::.::::::: . :::. . ::..:::::::
XP_006 KPLTMKKHEMVANPSVTCSHFARDLWPEQSIKDSFQKVTLRRYENYGHDNLQFKKGCESV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGK
:: :::::::::::: ::.::::.:::: :::: : :::::::::: :::::::::::::
XP_006 DECKVHKRGYNGLNQYLTTTQSKIFQCDKYVKVIHKFSNSNRHKIRHTGKKPFKCIECGK
130 140 150 160 170 180
190
pF1KB9 AFNQSSTLATHKKIH
::::::::.::::::
XP_006 AFNQSSTLTTHKKIHTGEKPFKCEECGKAFNWSSHLTTHKRIHTGEKRYKCEDCGKAFSR
190 200 210 220 230 240
>>XP_011525901 (OMIM: 603984) PREDICTED: zinc finger pro (550 aa)
initn: 1093 init1: 1093 opt: 1093 Z-score: 494.6 bits: 99.8 E(85289): 8.3e-21
Smith-Waterman score: 1093; 81.5% identity (91.8% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
::::.::::::::::::::::::::.::::.:::::::.::::::::.::::::::::::
XP_011 MGPLQFRDVAIEFSLEEWHCLDTAQRNLYRNVMLENYRNLVFLGIVVSKPDLITCLEQGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESV
::.:.:.:::.:. : : :::.:: ::::.::::::: . :::. . ::..:::::::
XP_011 KPLTMKKHEMVANPSVTCSHFARDLWPEQSIKDSFQKVTLRRYENYGHDNLQFKKGCESV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGK
:: :::::::::::: ::.::::.:::: :::: : :::::::::: :::::::::::::
XP_011 DECKVHKRGYNGLNQYLTTTQSKIFQCDKYVKVIHKFSNSNRHKIRHTGKKPFKCIECGK
130 140 150 160 170 180
190
pF1KB9 AFNQSSTLATHKKIH
::::::::.::::::
XP_011 AFNQSSTLTTHKKIHTGEKPFKCEECGKAFNWSSHLTTHKRIHTGEKRYKCEDCGKAFSR
190 200 210 220 230 240
>>XP_011525900 (OMIM: 603984) PREDICTED: zinc finger pro (551 aa)
initn: 1093 init1: 1093 opt: 1093 Z-score: 494.6 bits: 99.8 E(85289): 8.3e-21
Smith-Waterman score: 1093; 81.5% identity (91.8% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
::::.::::::::::::::::::::.::::.:::::::.::::::::.::::::::::::
XP_011 MGPLQFRDVAIEFSLEEWHCLDTAQRNLYRNVMLENYRNLVFLGIVVSKPDLITCLEQGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESV
::.:.:.:::.:. : : :::.:: ::::.::::::: . :::. . ::..:::::::
XP_011 KPLTMKKHEMVANPSVTCSHFARDLWPEQSIKDSFQKVTLRRYENYGHDNLQFKKGCESV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGK
:: :::::::::::: ::.::::.:::: :::: : :::::::::: :::::::::::::
XP_011 DECKVHKRGYNGLNQYLTTTQSKIFQCDKYVKVIHKFSNSNRHKIRHTGKKPFKCIECGK
130 140 150 160 170 180
190
pF1KB9 AFNQSSTLATHKKIH
::::::::.::::::
XP_011 AFNQSSTLTTHKKIHTGEKPFKCEECGKAFNWSSHLTTHKRIHTGEKRYKCEDCGKAFSR
190 200 210 220 230 240
>>XP_005259754 (OMIM: 603984) PREDICTED: zinc finger pro (551 aa)
initn: 1093 init1: 1093 opt: 1093 Z-score: 494.6 bits: 99.8 E(85289): 8.3e-21
Smith-Waterman score: 1093; 81.5% identity (91.8% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
::::.::::::::::::::::::::.::::.:::::::.::::::::.::::::::::::
XP_005 MGPLQFRDVAIEFSLEEWHCLDTAQRNLYRNVMLENYRNLVFLGIVVSKPDLITCLEQGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESV
::.:.:.:::.:. : : :::.:: ::::.::::::: . :::. . ::..:::::::
XP_005 KPLTMKKHEMVANPSVTCSHFARDLWPEQSIKDSFQKVTLRRYENYGHDNLQFKKGCESV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGK
:: :::::::::::: ::.::::.:::: :::: : :::::::::: :::::::::::::
XP_005 DECKVHKRGYNGLNQYLTTTQSKIFQCDKYVKVIHKFSNSNRHKIRHTGKKPFKCIECGK
130 140 150 160 170 180
190
pF1KB9 AFNQSSTLATHKKIH
::::::::.::::::
XP_005 AFNQSSTLTTHKKIHTGEKPFKCEECGKAFNWSSHLTTHKRIHTGEKRYKCEDCGKAFSR
190 200 210 220 230 240
>>NP_112495 (OMIM: 603975) zinc finger protein 93 [Homo (620 aa)
initn: 1043 init1: 1043 opt: 1043 Z-score: 473.3 bits: 96.0 E(85289): 1.3e-19
Smith-Waterman score: 1043; 79.5% identity (88.7% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
::::.::::::::::::::::::::.::::.:::::: .::::::::.:::::. :::::
NP_112 MGPLQFRDVAIEFSLEEWHCLDTAQRNLYRNVMLENYSNLVFLGIVVSKPDLIAHLEQGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KPFTVKRHEMIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCESV
::.:.:::::.:. :.: :::::: :::..::::::::. ::::: .:::.: : ::::
NP_112 KPLTMKRHEMVANPSVICSHFAQDLWPEQNIKDSFQKVILRRYEKRGHGNLQLIKRCESV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECGK
:: ::: :::::::: :.::::::::: : :: : :::::::.:: : :::::::::::
NP_112 DECKVHTGGYNGLNQCSTTTQSKVFQCDKYGKVFHKFSNSNRHNIRHTEKKPFKCIECGK
130 140 150 160 170 180
190
pF1KB9 AFNQSSTLATHKKIH
:::: ::: ::::::
NP_112 AFNQFSTLITHKKIHTGEKPYICEECGKAFKYSSALNTHKRIHTGEKPYKCDKCDKAFIA
190 200 210 220 230 240
>>NP_066971 (OMIM: 604756) zinc finger protein 273 [Homo (569 aa)
initn: 1470 init1: 991 opt: 991 Z-score: 451.9 bits: 92.0 E(85289): 2e-18
Smith-Waterman score: 991; 74.6% identity (87.6% similar) in 193 aa overlap (1-193:34-226)
10 20 30
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYR
:::: :::::::::::::.::::.::::::
NP_066 APRGPPSVAPLPAGIGRSTAKTPGLPGSLEMGPLTFRDVAIEFSLEEWQCLDTSQQNLYR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 DVMLENYRHLVFLGIVVTKPDLITCLEQGKKPFTVKRHEMIAKSPVMCFHFAQDLCPEQS
.:::.:::.::::::.:.::::::::::::.: ..::: :.:: ::.: :::::: :.:.
NP_066 NVMLDNYRNLVFLGIAVSKPDLITCLEQGKEPCNMKRHAMVAKPPVVCSHFAQDLWPKQG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB9 LKDSFQKVIVTRYEKREYGNLELKKGCESVDEGKVHKRGYNGLNQCLTATQSKVFQCDTY
:::::::::. :: : . ::.:.:::.:.:: :::::::::::::::.::::.:::: :
NP_066 LKDSFQKVILRRYGKYGHENLQLRKGCKSADEHKVHKRGYNGLNQCLTTTQSKIFQCDKY
130 140 150 160 170 180
160 170 180 190
pF1KB9 VKVSHIFSNSNRHKIRDTGKKPFKCIECGKAFNQSSTLATHKKIH
::: : ::::: :: :.:::::::: ::::. : :. :::
NP_066 VKVLHKFSNSNIHKKRQTGKKPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAF
190 200 210 220 230 240
NP_066 NQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFS
250 260 270 280 290 300
>>XP_016867177 (OMIM: 604756) PREDICTED: zinc finger pro (569 aa)
initn: 1470 init1: 991 opt: 991 Z-score: 451.9 bits: 92.0 E(85289): 2e-18
Smith-Waterman score: 991; 74.6% identity (87.6% similar) in 193 aa overlap (1-193:34-226)
10 20 30
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYR
:::: :::::::::::::.::::.::::::
XP_016 APRGPPSVAPLPAGIGRSTAKTPGLPGSLEMGPLTFRDVAIEFSLEEWQCLDTSQQNLYR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 DVMLENYRHLVFLGIVVTKPDLITCLEQGKKPFTVKRHEMIAKSPVMCFHFAQDLCPEQS
.:::.:::.::::::.:.::::::::::::.: ..::: :.:: ::.: :::::: :.:.
XP_016 NVMLDNYRNLVFLGIAVSKPDLITCLEQGKEPCNMKRHAMVAKPPVVCSHFAQDLWPKQG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB9 LKDSFQKVIVTRYEKREYGNLELKKGCESVDEGKVHKRGYNGLNQCLTATQSKVFQCDTY
:::::::::. :: : . ::.:.:::.:.:: :::::::::::::::.::::.:::: :
XP_016 LKDSFQKVILRRYGKYGHENLQLRKGCKSADEHKVHKRGYNGLNQCLTTTQSKIFQCDKY
130 140 150 160 170 180
160 170 180 190
pF1KB9 VKVSHIFSNSNRHKIRDTGKKPFKCIECGKAFNQSSTLATHKKIH
::: : ::::: :: :.:::::::: ::::. : :. :::
XP_016 VKVLHKFSNSNIHKKRQTGKKPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAF
190 200 210 220 230 240
XP_016 NQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFS
250 260 270 280 290 300
>>NP_003420 (OMIM: 603899) zinc finger protein 85 isofor (595 aa)
initn: 595 init1: 595 opt: 976 Z-score: 445.5 bits: 90.8 E(85289): 4.5e-18
Smith-Waterman score: 976; 72.4% identity (87.8% similar) in 196 aa overlap (1-195:1-196)
10 20 30 40 50 60
pF1KB9 MGPLEFRDVAIEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIVVTKPDLITCLEQGK
:::: ::::::::::.::.::::::.::::.:::::::.::::::.:.::::::::::::
NP_003 MGPLTFRDVAIEFSLKEWQCLDTAQRNLYRNVMLENYRNLVFLGITVSKPDLITCLEQGK
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 KPFTVKRHE-MIAKSPVMCFHFAQDLCPEQSLKDSFQKVIVTRYEKREYGNLELKKGCES
. ...:::: :.:: ::: :::::: :::..::::::: . :: : .. :: :.:::::
NP_003 EAWSMKRHEIMVAKPTVMCSHFAQDLWPEQNIKDSFQKVTLKRYGKCRHENLPLRKGCES
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 VDEGKVHKRGYNGLNQCLTATQSKVFQCDTYVKVSHIFSNSNRHKIRDTGKKPFKCIECG
.:: :.:: : :::::::::::::.:::: ::::.: :::::::.:: : :::::: .::
NP_003 MDECKMHKGGCNGLNQCLTATQSKIFQCDKYVKVAHKFSNSNRHEIRHTKKKPFKCTKCG
130 140 150 160 170 180
180 190
pF1KB9 KAFNQSSTLATHKKIH
:.:.. : :. :..::
NP_003 KSFGMISCLTEHSRIHTRVNFYKCEECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFN
190 200 210 220 230 240
195 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:19:30 2016 done: Fri Nov 4 18:19:31 2016
Total Scan time: 5.670 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]