Result of FASTA (ccds) for
pF1KB9688
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9688, 222 aa
1>>>pF1KB9688 222 - 222 aa - 222 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8984+/-0.00079; mu= 5.1450+/- 0.048
mean_var=197.8776+/-40.190, 0's: 0 Z-trim(116.0): 146 B-trim: 0 in 0/53
Lambda= 0.091175
statistics sampled from 16441 (16601) to 16441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.51), width: 16
Scan time: 2.510
The best scores are: opt bits E(32554)
CCDS8872.1 HOXC5 gene_id:3222|Hs108|chr12 ( 222) 1530 212.4 1.9e-55
CCDS11530.1 HOXB5 gene_id:3215|Hs108|chr17 ( 269) 525 80.2 1.4e-15
CCDS5406.1 HOXA5 gene_id:3202|Hs108|chr7 ( 270) 524 80.1 1.5e-15
CCDS2269.1 HOXD4 gene_id:3233|Hs108|chr2 ( 255) 502 77.2 1.1e-14
CCDS8873.1 HOXC4 gene_id:3221|Hs108|chr12 ( 264) 458 71.4 6e-13
CCDS11529.1 HOXB4 gene_id:3214|Hs108|chr17 ( 251) 456 71.1 7e-13
CCDS5405.1 HOXA4 gene_id:3201|Hs108|chr7 ( 320) 457 71.4 7.6e-13
CCDS11531.1 HOXB6 gene_id:3216|Hs108|chr17 ( 224) 422 66.6 1.4e-11
CCDS41792.1 HOXC6 gene_id:3223|Hs108|chr12 ( 153) 413 65.3 2.5e-11
CCDS5407.1 HOXA6 gene_id:3203|Hs108|chr7 ( 233) 413 65.4 3.3e-11
CCDS8871.1 HOXC6 gene_id:3223|Hs108|chr12 ( 235) 413 65.5 3.4e-11
>>CCDS8872.1 HOXC5 gene_id:3222|Hs108|chr12 (222 aa)
initn: 1530 init1: 1530 opt: 1530 Z-score: 1108.9 bits: 212.4 E(32554): 1.9e-55
Smith-Waterman score: 1530; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 EQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYL
130 140 150 160 170 180
190 200 210 220
pF1KB9 TRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
::::::::::::::::::::::::::::::::::::::::::
CCDS88 TRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
190 200 210 220
>>CCDS11530.1 HOXB5 gene_id:3215|Hs108|chr17 (269 aa)
initn: 521 init1: 404 opt: 525 Z-score: 393.4 bits: 80.2 E(32554): 1.4e-15
Smith-Waterman score: 553; 41.0% identity (60.5% similar) in 256 aa overlap (8-218:8-257)
10 20 30 40
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASR------------YCYGGLDLSIT
:: . :: : :.. ::::.: ...: : :.:.:::..
CCDS11 MSSYFVNSFSGRYPNGPDYQLL---NYGSGSSLSGSYRDPAAMHTGSYGYNYNGMDLSVN
10 20 30 40 50
50 60 70 80 90
pF1KB9 ------------------FPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDE
:: :: .. . .. . :. :. . . : : .
CCDS11 RSSASSSHFGAVGESSRAFPAPAQEPRFRQA-ASSCSLSSPESLPCTNGDSHGAKP--SA
60 70 80 90 100 110
100 110 120 130
pF1KB9 AAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAP------------P
..: . . ....: . ..:..:.: .: .: ..:. : : :
CCDS11 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEGQTP
120 130 140 150 160 170
140 150 160 170 180 190
pF1KB9 QIYPWMTKLHMSHET---DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLN
::.::: :::.::. ::::.::.::::::::::::::::::::::::::::. :::.
CCDS11 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
180 190 200 210 220 230
200 210 220
pF1KB9 ERQIKIWFQNRRMKWKKDSKMKSKEAL
::::::::::::::::::.:.::
CCDS11 ERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
240 250 260
>>CCDS5406.1 HOXA5 gene_id:3202|Hs108|chr7 (270 aa)
initn: 523 init1: 410 opt: 524 Z-score: 392.7 bits: 80.1 E(32554): 1.5e-15
Smith-Waterman score: 589; 45.0% identity (65.7% similar) in 251 aa overlap (9-218:9-258)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASE-------VQASRYCYG--GLDLSITFPP
: . :: : :.... :...:.:: ....:: :: :.:::.
CCDS54 MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSG
10 20 30 40 50 60
60 70 80 90 100
pF1KB9 PAPSNS-LHGVDMAANPRAHPDRPACSAAAAPGHAPGRDE-----AAPLNPGMYSQKAAR
. .: .. ..::. : : .: : :. :.: : .:: .:: :.....
CCDS54 SGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAP-SPGSDSHHGGK
70 80 90 100 110
110 120 130 140
pF1KB9 PAL------------------EERAKSSGEIKEEQAQTGQPAGLSQP-PAPP---QIYPW
.: : . .:: .. :.. : .. :.: :::: :::::
CCDS54 NSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPW
120 130 140 150 160 170
150 160 170 180 190
pF1KB9 MTKLHMSHET----DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQI
: :::.::.. .:::.::.::::::::::::::::::::::::::::. :::.::::
CCDS54 MRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQI
180 190 200 210 220 230
200 210 220
pF1KB9 KIWFQNRRMKWKKDSKMKSKEAL
::::::::::::::.:.::
CCDS54 KIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP
240 250 260 270
>>CCDS2269.1 HOXD4 gene_id:3233|Hs108|chr2 (255 aa)
initn: 513 init1: 366 opt: 502 Z-score: 377.3 bits: 77.2 E(32554): 1.1e-14
Smith-Waterman score: 502; 44.9% identity (64.4% similar) in 225 aa overlap (1-216:3-215)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPA--PSN
::::..:: : . :..: . :.: . :.. : ::: . : ::. :
CCDS22 MVMSSYMVNSKYVD-PKFPPCEEYLQGGYLGE---QGADY-YGGGAQGADFQPPGLYPRP
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 SLHGVDMAAN-PRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSS
.. .... : :: . . :: .:: ::: .: . : :: :..
CCDS22 DFGEQPFGGSGPGPGSALPARGHGQEPG-GPGGHYAAPGEP-CPAPPAPPPAPLPGARAY
60 70 80 90 100 110
120 130 140 150 160
pF1KB9 GEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMS----HETDG--KRSRTSYTRYQTLE
.. .: .: ..:.:: . .:::: :.:.. . : : :::::.::: :.::
CCDS22 SQSDPKQPPSG--TALKQPAV---VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLE
120 130 140 150 160
170 180 190 200 210 220
pF1KB9 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
::::::::::::::::::::..:::.:::::::::::::::::: :.
CCDS22 LEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSS
170 180 190 200 210 220
CCDS22 SSCSSSVAPSQHLQPMAKDHHTDLTTL
230 240 250
>>CCDS8873.1 HOXC4 gene_id:3221|Hs108|chr12 (264 aa)
initn: 494 init1: 360 opt: 458 Z-score: 345.9 bits: 71.4 E(32554): 6e-13
Smith-Waterman score: 468; 40.7% identity (57.7% similar) in 241 aa overlap (1-216:3-217)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITF--------P
::::. .: : . :..: : .:.. : . : : : :
CCDS88 MIMSSYLMDSNYID-PKFPP-----CEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYP
10 20 30 40 50
60 70 80 90 100
pF1KB9 PPAPSNSLHGVDMAANPRAHPDRP-ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALE
:: : : .:.: .:.. .::.. :. .: . : . . .. .:
CCDS88 PPPPRPS------------YPERQYSCTSLQGPGNSRGH---GPAQAGHHHPEKSQ-SLC
60 70 80 90
110 120 130 140 150
pF1KB9 ERAKSSGEIKEEQAQTGQPAGLSQPPAP----------PQIYPWMTKLHMSH---ETDG-
: : :: . . : . ::: :: : .:::: :.:.: . .:
CCDS88 EPAPLSGA---SASPSPAPPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGG
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB9 --KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKD
:::::.::: :.::::::::.:::::::::::::..:::.::::::::::::::::::
CCDS88 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD
160 170 180 190 200 210
220
pF1KB9 SKMKSKEAL
..
CCDS88 HRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
220 230 240 250 260
>>CCDS11529.1 HOXB4 gene_id:3214|Hs108|chr17 (251 aa)
initn: 469 init1: 360 opt: 456 Z-score: 344.7 bits: 71.1 E(32554): 7e-13
Smith-Waterman score: 456; 40.1% identity (56.5% similar) in 232 aa overlap (1-216:3-223)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSL
:::.. :: : . :..: . . ..: .. .. : :: .: : :
CCDS11 MAMSSFLINSNYVD-PKFPPCEEYSQSDYLPSD--HSPGYYAGGQRRESSFQPEAG----
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 HGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEI
: : . . . :: . : : : ::. . : : :.
CCDS11 FGRRAACTVQRYA---ACRDPGPPPPPPPPPPPPP-PPGLSPRAPAPPPAGALLPEPGQR
60 70 80 90 100
120 130 140 150 160
pF1KB9 KEEQAQTGQPAGLSQ-P--PAP-------PQIYPWMTKLHMS----HETDG--KRSRTSY
: ... : .: : :.: : .:::: :.:.: . . : :::::.:
CCDS11 CEAVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRSRTAY
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB9 TRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
:: :.::::::::.:::::::::.:::. :::.:::::::::::::::::: :.
CCDS11 TRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIR
170 180 190 200 210 220
CCDS11 SGGAAGSAGGPPGRPNGGPRAL
230 240 250
>>CCDS5405.1 HOXA4 gene_id:3201|Hs108|chr7 (320 aa)
initn: 431 init1: 365 opt: 457 Z-score: 344.1 bits: 71.4 E(32554): 7.6e-13
Smith-Waterman score: 467; 42.3% identity (58.1% similar) in 227 aa overlap (2-216:71-276)
10 20 30
pF1KB9 MSSYVANSFYKQSPNIPAYNMQTCGNYGSAS
.:: : .. : :: . .:.:.
CCDS54 GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTARE-PAYPAAALYP--AHGAAD
50 60 70 80 90
40 50 60 70 80
pF1KB9 EVQASRYCYGGLDLSITFP--PPA----PSNSLHGVDMAANPRAHPDRPACSAAAAPGHA
. : :. : ::: :...::. . : .: :.: :
CCDS54 TAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPR----AVPPAA
100 110 120 130 140 150
90 100 110 120 130 140
pF1KB9 PGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMT
: : :::: .::. . .: :: ... : ::. : .::::
CCDS54 PRRCEAAPATPGVPAGGSA-PACPLLLADKS-----------PLGLKGKE--PVVYPWMK
160 170 180 190
150 160 170 180 190
pF1KB9 KLHMS------HETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQI
:.:.: . . :::::.::: :.::::::::::::::::::::::..:::.:::.
CCDS54 KIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQV
200 210 220 230 240 250
200 210 220
pF1KB9 KIWFQNRRMKWKKDSKMKSKEAL
:::::::::::::: :.
CCDS54 KIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPSS
260 270 280 290 300 310
>>CCDS11531.1 HOXB6 gene_id:3216|Hs108|chr17 (224 aa)
initn: 430 init1: 347 opt: 422 Z-score: 321.2 bits: 66.6 E(32554): 1.4e-11
Smith-Waterman score: 429; 45.9% identity (64.7% similar) in 170 aa overlap (67-222:45-213)
40 50 60 70 80 90
pF1KB9 RYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLN-
: :. ... : . : .::: .
CCDS11 ASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAAPCDY
20 30 40 50 60 70
100 110 120 130 140
pF1KB9 ---PGMYSQKAARPAL---EERAKSSGEI-KEEQAQTGQPAGLS--QPPAPPQIYPWMTK
:..: .: . :: .:. : : . :: . : . : . : .:::: .
CCDS11 GPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTP-VYPWMQR
80 90 100 110 120 130
150 160 170 180 190 200
pF1KB9 LHMSHETD----GKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIW
.. . .. :.:.: .::::::::::::::.:::::::::::::. :::.:::::::
CCDS11 MNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIW
140 150 160 170 180 190
210 220
pF1KB9 FQNRRMKWKKDSKMKSKEAL
::::::::::.::. : :
CCDS11 FQNRRMKWKKESKLLSASQLSAEEEEEKQAE
200 210 220
>>CCDS41792.1 HOXC6 gene_id:3223|Hs108|chr12 (153 aa)
initn: 382 init1: 338 opt: 413 Z-score: 316.9 bits: 65.3 E(32554): 2.5e-11
Smith-Waterman score: 413; 61.9% identity (79.0% similar) in 105 aa overlap (119-218:20-122)
90 100 110 120 130 140
pF1KB9 DEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLH
.. ... :. : .: : :::::: ...
CCDS41 MLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQK-ASIQIYPWMQRMN
10 20 30 40
150 160 170 180 190 200
pF1KB9 MSHE-----TDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWF
:: .: .:.: :.::::::::::::::::::::::::::: :::.::::::::
CCDS41 -SHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWF
50 60 70 80 90 100
210 220
pF1KB9 QNRRMKWKKDSKMKSKEAL
:::::::::.:.. :
CCDS41 QNRRMKWKKESNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE
110 120 130 140 150
>>CCDS5407.1 HOXA6 gene_id:3203|Hs108|chr7 (233 aa)
initn: 425 init1: 349 opt: 413 Z-score: 314.6 bits: 65.4 E(32554): 3.3e-11
Smith-Waterman score: 414; 38.8% identity (59.9% similar) in 232 aa overlap (1-216:1-216)
10 20 30 40 50
pF1KB9 MSSYVANSFYKQS-PN--------IPAYNMQTCGNYGSASEVQASRYCYGGLDL-SITFP
:::: .: . : :. .: :. ..: . :: ::. .: . :.
CCDS54 MSSYFVNPTFPGSLPSGQDSFLGQLPLYQ----AGYDALRPFPAS---YGASSLPDKTYT
10 20 30 40 50
60 70 80 90 100
pF1KB9 PPAPSNSLHGVDMAANPRAHPDRPAC--SAAAAPGHAPGRDEAAPLNPGMYSQKAARPAL
: .. ..: .: : .. .: : : .:. . .:: : . . :
CCDS54 SPCFYQQSNSV-LACNRASYEYGASCFYSDKDLSGASPS-GSGKQRGPGDYLHFS--PEQ
60 70 80 90 100
110 120 130 140 150 160
pF1KB9 EERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMS----HETDGKRSRTSYTR
. . ::. :... . : .. . : .:::: ... . . :.:.: .:::
CCDS54 QYKPDSSSG----QGKALHDEGADRKYTSP-VYPWMQRMNSCAGAVYGSHGRRGRQTYTR
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB9 YQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
:::::::::::::::::::::::::: :::.:::::::::::::::::..:.
CCDS54 YQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLINSTQPSG
170 180 190 200 210 220
CCDS54 EDSEAKAGE
230
222 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:20:04 2016 done: Fri Nov 4 18:20:05 2016
Total Scan time: 2.510 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]