FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9690, 226 aa
  1>>>pF1KB9690 226 - 226 aa - 226 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0260+/-0.000759; mu= 7.3505+/- 0.046
 mean_var=265.6645+/-53.394, 0's: 0 Z-trim(118.8): 8  B-trim: 192 in 1/53
 Lambda= 0.078688
 statistics sampled from 19870 (19878) to 19870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.865), E-opt: 0.2 (0.611), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS6445.1 DMRT2 gene_id:10655|Hs108|chr9          ( 226) 1607 193.8 7.4e-50
CCDS6444.1 DMRT2 gene_id:10655|Hs108|chr9          ( 561) 1495 181.6 8.8e-46


>>CCDS6445.1 DMRT2 gene_id:10655|Hs108|chr9               (226 aa)
 initn: 1607 init1: 1607 opt: 1607  Z-score: 1008.6  bits: 193.8 E(32554): 7.4e-50
Smith-Waterman score: 1607; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
              130       140       150       160       170       180

              190       200       210       220      
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
              190       200       210       220      

>>CCDS6444.1 DMRT2 gene_id:10655|Hs108|chr9               (561 aa)
 initn: 1495 init1: 1495 opt: 1495  Z-score: 935.4  bits: 181.6 E(32554): 8.8e-46
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
              130       140       150       160       170       180

              190       200       210       220                    
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL              
       :::::::::::::::::::::::::::::                               
CCDS64 SGKQNNFERKAVYQRQVRAPSLLAKSILEGYRPIPAETYVGGTFPLPPPVSDRMRKRRAF
              190       200       210       220       230       240




226 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:21:03 2016 done: Fri Nov  4 18:21:04 2016
 Total Scan time:  2.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]