Result of FASTA (omim) for
pF1KB9690
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9690, 226 aa
1>>>pF1KB9690 226 - 226 aa - 226 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1488+/-0.0003; mu= 6.3389+/- 0.019
mean_var=270.5245+/-55.335, 0's: 0 Z-trim(126.5): 26 B-trim: 874 in 1/61
Lambda= 0.077978
statistics sampled from 52660 (52686) to 52660 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.866), E-opt: 0.2 (0.618), width: 16
Scan time: 8.180
The best scores are: opt bits E(85289)
NP_006548 (OMIM: 604935) doublesex- and mab-3-rela ( 226) 1607 192.3 5.8e-49
NP_001124337 (OMIM: 604935) doublesex- and mab-3-r ( 226) 1607 192.3 5.8e-49
XP_016869705 (OMIM: 604935) PREDICTED: doublesex- ( 226) 1607 192.3 5.8e-49
XP_016869703 (OMIM: 604935) PREDICTED: doublesex- ( 561) 1495 180.1 6.4e-45
XP_016869704 (OMIM: 604935) PREDICTED: doublesex- ( 561) 1495 180.1 6.4e-45
XP_011515989 (OMIM: 604935) PREDICTED: doublesex- ( 561) 1495 180.1 6.4e-45
NP_870987 (OMIM: 604935) doublesex- and mab-3-rela ( 561) 1495 180.1 6.4e-45
XP_016869702 (OMIM: 604935) PREDICTED: doublesex- ( 561) 1495 180.1 6.4e-45
XP_011515992 (OMIM: 604935) PREDICTED: doublesex- ( 561) 1495 180.1 6.4e-45
XP_016869864 (OMIM: 602424) PREDICTED: doublesex- ( 215) 416 58.3 1.2e-08
NP_068770 (OMIM: 602424) doublesex- and mab-3-rela ( 373) 416 58.5 1.7e-08
XP_006716795 (OMIM: 602424) PREDICTED: doublesex- ( 374) 416 58.5 1.7e-08
NP_071443 (OMIM: 614803) doublesex- and mab-3-rela ( 504) 401 57.0 6.7e-08
XP_011540239 (OMIM: 614804) PREDICTED: doublesex- ( 542) 374 54.0 5.7e-07
NP_115486 (OMIM: 614804) doublesex- and mab-3-rela ( 542) 374 54.0 5.7e-07
NP_067063 (OMIM: 614754) doublesex- and mab-3-rela ( 472) 356 51.9 2.1e-06
XP_016882613 (OMIM: 614806) PREDICTED: doublesex- ( 421) 339 49.9 7.5e-06
XP_011525518 (OMIM: 614806) PREDICTED: doublesex- ( 228) 334 49.1 7.5e-06
NP_001035373 (OMIM: 614806) doublesex- and mab-3-r ( 367) 334 49.3 1e-05
XP_016882618 (OMIM: 614806) PREDICTED: doublesex- ( 372) 334 49.3 1e-05
XP_016882616 (OMIM: 614806) PREDICTED: doublesex- ( 418) 334 49.4 1.1e-05
XP_016882615 (OMIM: 614806) PREDICTED: doublesex- ( 418) 334 49.4 1.1e-05
XP_016882617 (OMIM: 614806) PREDICTED: doublesex- ( 418) 334 49.4 1.1e-05
XP_016882614 (OMIM: 614806) PREDICTED: doublesex- ( 418) 334 49.4 1.1e-05
XP_016882612 (OMIM: 614806) PREDICTED: doublesex- ( 423) 334 49.4 1.1e-05
NP_149056 (OMIM: 614805) doublesex- and mab-3-rela ( 342) 268 41.9 0.0017
>>NP_006548 (OMIM: 604935) doublesex- and mab-3-related (226 aa)
initn: 1607 init1: 1607 opt: 1607 Z-score: 1000.1 bits: 192.3 E(85289): 5.8e-49
Smith-Waterman score: 1607; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
130 140 150 160 170 180
190 200 210 220
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
190 200 210 220
>>NP_001124337 (OMIM: 604935) doublesex- and mab-3-relat (226 aa)
initn: 1607 init1: 1607 opt: 1607 Z-score: 1000.1 bits: 192.3 E(85289): 5.8e-49
Smith-Waterman score: 1607; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
130 140 150 160 170 180
190 200 210 220
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
190 200 210 220
>>XP_016869705 (OMIM: 604935) PREDICTED: doublesex- and (226 aa)
initn: 1607 init1: 1607 opt: 1607 Z-score: 1000.1 bits: 192.3 E(85289): 5.8e-49
Smith-Waterman score: 1607; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
130 140 150 160 170 180
190 200 210 220
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
190 200 210 220
>>XP_016869703 (OMIM: 604935) PREDICTED: doublesex- and (561 aa)
initn: 1495 init1: 1495 opt: 1495 Z-score: 927.5 bits: 180.1 E(85289): 6.4e-45
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
130 140 150 160 170 180
190 200 210 220
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
:::::::::::::::::::::::::::::
XP_016 SGKQNNFERKAVYQRQVRAPSLLAKSILEGYRPIPAETYVGGTFPLPPPVSDRMRKRRAF
190 200 210 220 230 240
>>XP_016869704 (OMIM: 604935) PREDICTED: doublesex- and (561 aa)
initn: 1495 init1: 1495 opt: 1495 Z-score: 927.5 bits: 180.1 E(85289): 6.4e-45
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
130 140 150 160 170 180
190 200 210 220
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
:::::::::::::::::::::::::::::
XP_016 SGKQNNFERKAVYQRQVRAPSLLAKSILEGYRPIPAETYVGGTFPLPPPVSDRMRKRRAF
190 200 210 220 230 240
>>XP_011515989 (OMIM: 604935) PREDICTED: doublesex- and (561 aa)
initn: 1495 init1: 1495 opt: 1495 Z-score: 927.5 bits: 180.1 E(85289): 6.4e-45
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
130 140 150 160 170 180
190 200 210 220
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
:::::::::::::::::::::::::::::
XP_011 SGKQNNFERKAVYQRQVRAPSLLAKSILEGYRPIPAETYVGGTFPLPPPVSDRMRKRRAF
190 200 210 220 230 240
>>NP_870987 (OMIM: 604935) doublesex- and mab-3-related (561 aa)
initn: 1495 init1: 1495 opt: 1495 Z-score: 927.5 bits: 180.1 E(85289): 6.4e-45
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_870 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_870 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_870 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
130 140 150 160 170 180
190 200 210 220
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
:::::::::::::::::::::::::::::
NP_870 SGKQNNFERKAVYQRQVRAPSLLAKSILEGYRPIPAETYVGGTFPLPPPVSDRMRKRRAF
190 200 210 220 230 240
>>XP_016869702 (OMIM: 604935) PREDICTED: doublesex- and (561 aa)
initn: 1495 init1: 1495 opt: 1495 Z-score: 927.5 bits: 180.1 E(85289): 6.4e-45
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
130 140 150 160 170 180
190 200 210 220
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
:::::::::::::::::::::::::::::
XP_016 SGKQNNFERKAVYQRQVRAPSLLAKSILEGYRPIPAETYVGGTFPLPPPVSDRMRKRRAF
190 200 210 220 230 240
>>XP_011515992 (OMIM: 604935) PREDICTED: doublesex- and (561 aa)
initn: 1495 init1: 1495 opt: 1495 Z-score: 927.5 bits: 180.1 E(85289): 6.4e-45
Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB9 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MADPQAGSAAGDWEIDVESLELEEDVCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEGDGEEAGASPGMPGQPEQRGGPQPRPPLAPQASPAGTGPRERCTPAGGGAEPRKLSRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PKCARCRNHGVVSCLKGHKRFCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGL
130 140 150 160 170 180
190 200 210 220
pF1KB9 SGKQNNFERKAVYQRQVRAPSLLAKSILEVLLGLFYSYYVYIMNHL
:::::::::::::::::::::::::::::
XP_011 SGKQNNFERKAVYQRQVRAPSLLAKSILEGYRPIPAETYVGGTFPLPPPVSDRMRKRRAF
190 200 210 220 230 240
>>XP_016869864 (OMIM: 602424) PREDICTED: doublesex- and (215 aa)
initn: 433 init1: 371 opt: 416 Z-score: 276.2 bits: 58.3 E(85289): 1.2e-08
Smith-Waterman score: 416; 50.4% identity (65.6% similar) in 131 aa overlap (56-181:4-134)
30 40 50 60 70 80
pF1KB9 VCGAPRSTPPGPSPPPADGDCEDDEDDDGVDEDAEEEGDGEEAGASPGMPGQPEQRGGPQ
:: . . :: .::.: : . : .
XP_016 MPNDEAFSKPSTPSEAPHAPGVPPQGRAGGFGK
10 20 30
90 100 110 120 130 140
pF1KB9 PRPPLAPQASPAGTGPRERCTPAGGGAEP-----RKLSRTPKCARCRNHGVVSCLKGHKR
:. :: ...: : .:.:: .: : :::::::::: .: ::::::
XP_016 ASGALVGAASGSSAGGSSRGGGSGSGASDLGAGSKKSPRLPKCARCRNHGYASPLKGHKR
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB9 FCRWRDCQCANCLLVVERQRVMAAQVALRRQQATEDKKGLSGKQNNFERKAVYQRQVRAP
:: :::::: .: :..::::::::::::::::: :.. :.:
XP_016 FCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEELGISHPIPLPSAAELLVKRENNG
100 110 120 130 140 150
210 220
pF1KB9 SLLAKSILEVLLGLFYSYYVYIMNHL
XP_016 SNPCLMTECSGTSQPPPASVPTTAASDEEHGEPPCNELPVQDAFLLPASLLPGPERAPVL
160 170 180 190 200 210
226 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:21:04 2016 done: Fri Nov 4 18:21:05 2016
Total Scan time: 8.180 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]