Result of FASTA (omim) for
pF1KB9692
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9692, 243 aa
1>>>pF1KB9692 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8512+/-0.000305; mu= 13.9516+/- 0.019
mean_var=123.6490+/-24.987, 0's: 0 Z-trim(120.5): 283 B-trim: 27 in 1/53
Lambda= 0.115340
statistics sampled from 35526 (35886) to 35526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.421), width: 16
Scan time: 5.810
The best scores are: opt bits E(85289)
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 1688 291.1 1.1e-78
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 1688 291.1 1.1e-78
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 1671 288.3 8.1e-78
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 997 176.2 4.7e-44
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 788 141.5 1.6e-33
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 771 138.6 1.1e-32
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 540 99.7 2.1e-21
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 439 83.3 4e-16
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 439 83.3 4e-16
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 439 83.3 4e-16
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 439 83.4 4.7e-16
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 427 81.3 1.6e-15
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 410 78.4 1.1e-14
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 392 75.5 9.3e-14
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 381 73.6 3.3e-13
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 373 72.1 6.2e-13
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 360 70.2 4.1e-12
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 358 69.9 5.1e-12
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 353 69.0 8e-12
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 316 62.9 6.3e-10
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 315 62.7 7e-10
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 313 62.5 1.1e-09
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 310 61.9 1.2e-09
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 310 62.0 1.5e-09
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 310 62.0 1.5e-09
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 305 61.2 2.7e-09
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 303 60.7 2.9e-09
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 303 60.7 2.9e-09
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 301 60.4 3.6e-09
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 287 58.1 1.9e-08
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 289 58.6 1.9e-08
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 286 57.9 2.1e-08
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 270 55.4 1.6e-07
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 267 54.7 1.8e-07
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 266 54.6 2.2e-07
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 267 54.9 2.2e-07
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 55.1 2.3e-07
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 268 55.1 2.3e-07
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 55.1 2.3e-07
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 268 55.1 2.3e-07
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 55.1 2.3e-07
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 55.1 2.3e-07
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 268 55.1 2.3e-07
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 266 54.7 2.5e-07
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 266 54.7 2.5e-07
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 266 54.8 2.9e-07
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 266 54.8 2.9e-07
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 266 54.8 2.9e-07
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 266 54.8 2.9e-07
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 266 54.8 2.9e-07
>>XP_016880053 (OMIM: 142963) PREDICTED: homeobox protei (243 aa)
initn: 1688 init1: 1688 opt: 1688 Z-score: 1533.3 bits: 291.1 E(85289): 1.1e-78
Smith-Waterman score: 1688; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KB9 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 HALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKG
190 200 210 220 230 240
pF1KB9 DKK
:::
XP_016 DKK
>>NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [Homo (243 aa)
initn: 1688 init1: 1688 opt: 1688 Z-score: 1533.3 bits: 291.1 E(85289): 1.1e-78
Smith-Waterman score: 1688; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KB9 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 PSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 EAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 HALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_076 HALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKG
190 200 210 220 230 240
pF1KB9 DKK
:::
NP_076 DKK
>>XP_005257343 (OMIM: 142963) PREDICTED: homeobox protei (242 aa)
initn: 1028 init1: 1028 opt: 1671 Z-score: 1518.1 bits: 288.3 E(85289): 8.1e-78
Smith-Waterman score: 1671; 99.6% identity (99.6% similar) in 243 aa overlap (1-243:1-242)
10 20 30 40 50 60
pF1KB9 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
XP_005 EAEGSEQSPSPTQLFPWMRPQAA-GRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVS
130 140 150 160 170
190 200 210 220 230 240
pF1KB9 HALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKG
180 190 200 210 220 230
pF1KB9 DKK
:::
XP_005 DKK
240
>>NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [Homo (242 aa)
initn: 947 init1: 645 opt: 997 Z-score: 911.9 bits: 176.2 E(85289): 4.7e-44
Smith-Waterman score: 997; 62.0% identity (81.6% similar) in 245 aa overlap (1-239:1-241)
10 20 30 40 50
pF1KB9 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGS---FQHPSQ-IQE
::::::: ::::::.::::.: :::: : :..: ..:::: ::: ::: :. .:.
NP_073 MSSYFVNPLFSKYKAGESLEPAYYDCRFPQSVGRSHALVYGP--GGSAPGFQHASHHVQD
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 FYH-GPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAA
:.: : :..:.. ::::::...:::: ..::::. : ::::.::: . ..::: ::: .:
NP_073 FFHHGTSGISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 ASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRK
.. .: .:. ::. .::::::.: ::: ::::::::::::::::::::::::::
NP_073 NTNSSEGQGHLNQNSSPSLMFPWMRPHAP-GRRSGRQTYSRYQTLELEKEFLFNPYLTRK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 RRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADE
:::::::::::::::::::::::::::::::::::.:... ..:..:.. :. . .:
NP_073 RRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGAR-DEEKVEEEGNEEEEKEEEE
180 190 200 210 220 230
240
pF1KB9 GDAQKGDKK
. .:
NP_073 KEENKD
240
>>NP_062458 (OMIM: 142985) homeobox protein Hox-D8 isofo (290 aa)
initn: 941 init1: 699 opt: 788 Z-score: 723.0 bits: 141.5 E(85289): 1.6e-33
Smith-Waterman score: 826; 52.1% identity (69.4% similar) in 265 aa overlap (16-235:24-287)
10 20 30 40
pF1KB9 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG
::.. :.:::: :: ..::: .. .:: :..:
NP_062 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
10 20 30 40 50 60
50 60 70
pF1KB9 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP-----------
. ::: . ::..: .. .: :: :
NP_062 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
70 80 90 100 110 120
80 90 100 110 120
pF1KB9 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS
:. .::::.:..::::: :::: .: .: . .:::: ::: ......::. . .::
NP_062 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS
130 140 150 160 170
130 140 150 160 170 180
pF1KB9 PSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER
::.:.::::::::: :::::::::::.:::::::::::::::::::::::::::.::::
NP_062 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER
180 190 200 210 220 230
190 200 210 220 230 240
pF1KB9 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-KQKLERAPEAADEGDAQKGDKK
::::::::::::::::::::::: :. : .. : :.. .. : ::
NP_062 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
240 250 260 270 280 290
>>NP_001186675 (OMIM: 142985) homeobox protein Hox-D8 is (289 aa)
initn: 890 init1: 467 opt: 771 Z-score: 707.7 bits: 138.6 E(85289): 1.1e-32
Smith-Waterman score: 809; 51.7% identity (69.1% similar) in 265 aa overlap (16-235:24-286)
10 20 30 40
pF1KB9 MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG
::.. :.:::: :: ..::: .. .:: :..:
NP_001 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
10 20 30 40 50 60
50 60 70
pF1KB9 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP-----------
. ::: . ::..: .. .: :: :
NP_001 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
70 80 90 100 110 120
80 90 100 110 120
pF1KB9 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS
:. .::::.:..::::: :::: .: .: . .:::: ::: ......::. . .::
NP_001 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS
130 140 150 160 170
130 140 150 160 170 180
pF1KB9 PSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER
::.:.:::::::: :::::::::::.:::::::::::::::::::::::::::.::::
NP_001 SSPSQMFPWMRPQAP-GRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER
180 190 200 210 220 230
190 200 210 220 230 240
pF1KB9 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-KQKLERAPEAADEGDAQKGDKK
::::::::::::::::::::::: :. : .. : :.. .. : ::
NP_001 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
240 250 260 270 280
>>NP_001186676 (OMIM: 142985) homeobox protein Hox-D8 is (106 aa)
initn: 536 init1: 536 opt: 540 Z-score: 505.3 bits: 99.7 E(85289): 2.1e-21
Smith-Waterman score: 540; 78.6% identity (88.3% similar) in 103 aa overlap (134-235:1-103)
110 120 130 140 150 160
pF1KB9 LVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEK
.::::::::: :::::::::::.:::::::
NP_001 MFPWMRPQAAPGRRRGRQTYSRFQTLELEK
10 20 30
170 180 190 200 210 220
pF1KB9 EFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-K
::::::::::::::::::::.::::::::::::::::::::::::::: :. : .. : :
NP_001 EFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETK
40 50 60 70 80 90
230 240
pF1KB9 QKLERAPEAADEGDAQKGDKK
.. .. : ::
NP_001 KEAQELEEDRAEGLTN
100
>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 429 init1: 348 opt: 439 Z-score: 410.5 bits: 83.3 E(85289): 4e-16
Smith-Waterman score: 439; 41.6% identity (59.7% similar) in 238 aa overlap (1-223:1-222)
10 20 30 40 50
pF1KB9 MSSYFVNSLFS-KYKTG-ESLRPNY--YDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQE
:::::::: : .: ::. . :. :.:. : :. :::. : : .
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAP-YGPGPG---QDKGFATS
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 FYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQD-PDL---VQYADCKL
:. :.. . . . :: .: :: . . .: ::.. : . . .::
XP_005 SYYPPAGGGYG--RAAPCD---YGPAPAFY-REKESACALSGADEQPPFHPEPRKSDCA-
60 70 80 90 100
120 130 140 150 160
pF1KB9 AAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGR-------RRGRQTYSRYQTLELEKEF
: .:: .:.. : ..:::. . . . :::::::.:::::::::::
XP_005 QDKSVFGE----TEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEF
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB9 LFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKL
.: ::::.::::..::: :::::.::::::::::::::. : :. .:: :::
XP_005 HYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKES-KLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
230 240
pF1KB9 ERAPEAADEGDAQKGDKK
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 429 init1: 348 opt: 439 Z-score: 410.5 bits: 83.3 E(85289): 4e-16
Smith-Waterman score: 439; 41.6% identity (59.7% similar) in 238 aa overlap (1-223:1-222)
10 20 30 40 50
pF1KB9 MSSYFVNSLFS-KYKTG-ESLRPNY--YDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQE
:::::::: : .: ::. . :. :.:. : :. :::. : : .
XP_005 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAP-YGPGPG---QDKGFATS
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 FYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQD-PDL---VQYADCKL
:. :.. . . . :: .: :: . . .: ::.. : . . .::
XP_005 SYYPPAGGGYG--RAAPCD---YGPAPAFY-REKESACALSGADEQPPFHPEPRKSDCA-
60 70 80 90 100
120 130 140 150 160
pF1KB9 AAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGR-------RRGRQTYSRYQTLELEKEF
: .:: .:.. : ..:::. . . . :::::::.:::::::::::
XP_005 QDKSVFGE----TEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEF
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB9 LFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKL
.: ::::.::::..::: :::::.::::::::::::::. : :. .:: :::
XP_005 HYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKES-KLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
230 240
pF1KB9 ERAPEAADEGDAQKGDKK
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 429 init1: 348 opt: 439 Z-score: 410.5 bits: 83.3 E(85289): 4e-16
Smith-Waterman score: 439; 41.6% identity (59.7% similar) in 238 aa overlap (1-223:1-222)
10 20 30 40 50
pF1KB9 MSSYFVNSLFS-KYKTG-ESLRPNY--YDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQE
:::::::: : .: ::. . :. :.:. : :. :::. : : .
NP_061 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAP-YGPGPG---QDKGFATS
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 FYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQD-PDL---VQYADCKL
:. :.. . . . :: .: :: . . .: ::.. : . . .::
NP_061 SYYPPAGGGYG--RAAPCD---YGPAPAFY-REKESACALSGADEQPPFHPEPRKSDCA-
60 70 80 90 100
120 130 140 150 160
pF1KB9 AAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGR-------RRGRQTYSRYQTLELEKEF
: .:: .:.. : ..:::. . . . :::::::.:::::::::::
NP_061 QDKSVFGE----TEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEF
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB9 LFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKL
.: ::::.::::..::: :::::.::::::::::::::. : :. .:: :::
NP_061 HYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKES-KLLSASQLSAEEEEEKQAE
170 180 190 200 210 220
230 240
pF1KB9 ERAPEAADEGDAQKGDKK
243 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:22:09 2016 done: Fri Nov 4 18:22:10 2016
Total Scan time: 5.810 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]