FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9695, 264 aa
  1>>>pF1KB9695 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0890+/-0.000699; mu= 10.7060+/- 0.043
 mean_var=200.7837+/-40.965, 0's: 0 Z-trim(117.4): 163  B-trim: 0 in 0/56
 Lambda= 0.090513
 statistics sampled from 18013 (18188) to 18013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.559), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS9326.1 GSX1 gene_id:219409|Hs108|chr13         ( 264) 1834 250.7 7.8e-67
CCDS3494.1 GSX2 gene_id:170825|Hs108|chr4          ( 304)  516 78.7 5.5e-15


>>CCDS9326.1 GSX1 gene_id:219409|Hs108|chr13              (264 aa)
 initn: 1834 init1: 1834 opt: 1834  Z-score: 1313.4  bits: 250.7 E(32554): 7.8e-67
Smith-Waterman score: 1834; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB9 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 CVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 QTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCS
              190       200       210       220       230       240

              250       260    
pF1KB9 EDDDELPMSPSSSGKDDRDLTVTP
       ::::::::::::::::::::::::
CCDS93 EDDDELPMSPSSSGKDDRDLTVTP
              250       260    

>>CCDS3494.1 GSX2 gene_id:170825|Hs108|chr4               (304 aa)
 initn: 701 init1: 415 opt: 516  Z-score: 382.5  bits: 78.7 E(32554): 5.5e-15
Smith-Waterman score: 675; 44.6% identity (64.3% similar) in 294 aa overlap (21-261:25-302)

                   10        20        30        40        50      
pF1KB9     MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLC
                               :. .:  ..: ..::: ..   .:: : .::.: .:
CCDS34 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPG-CPSRKSGAFC
               10        20        30        40         50         

         60        70                                80          90
pF1KB9 VCPLCVTASQLHGPPGP------------------------PALPLLKASFP--PFGSQY
       ::::::: :.::.  :                          ::::::..:   :  .:.
CCDS34 VCPLCVT-SHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKGQFSSAPGDAQF
      60         70        80        90       100       110        

                          100       110       120                  
pF1KB9 C----------HAPLGRQH--SAVSPGVAHGPAAAAAAAALYQ--------------TSY
       :          : :  ..:  .  .:: : . ::::::::                 :.:
CCDS34 CPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTY
      120       130       140       150       160       170        

          130       140        150       160       170       180   
pF1KB9 PLPDPRQFHCISVDSS-SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATY
        . :::.:::... .: ..:.:..:::::::::::::::::::.::::::::::::::::
CCDS34 NVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATY
      180       190       200       210       220       230        

           190       200       210       220       230       240   
pF1KB9 LNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDD
       :::::::::::::::::::::::::...            ..  ::::.. :... ....
CCDS34 LNLSEKQVKIWFQNRRVKHKKEGKGTQR------------NSHAGCKCVG-SQVHYARSE
      240       250       260                   270        280     

           250       260    
pF1KB9 DELPMSPSSSGKDDRDLTVTP
       ::  .::.:.. ::....   
CCDS34 DEDSLSPASAN-DDKEISPL 
         290        300     




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:23:15 2016 done: Fri Nov  4 18:23:16 2016
 Total Scan time:  2.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]