FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9696, 265 aa
  1>>>pF1KB9696 265 - 265 aa - 265 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5453+/-0.000975; mu= -2.5791+/- 0.059
 mean_var=538.0710+/-110.748, 0's: 0 Z-trim(119.2): 92  B-trim: 192 in 1/54
 Lambda= 0.055291
 statistics sampled from 20269 (20372) to 20269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.626), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS4304.1 CDX1 gene_id:1044|Hs108|chr5            ( 265) 1881 163.2 1.7e-40


>>CCDS4304.1 CDX1 gene_id:1044|Hs108|chr5                 (265 aa)
 initn: 1881 init1: 1881 opt: 1881  Z-score: 840.3  bits: 163.2 E(32554): 1.7e-40
Smith-Waterman score: 1881; 99.6% identity (99.6% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KB9 MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MYVGYVLDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 WGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TPSSPGAQRRTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TPSSPGAQRPTPYEWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 IRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGPSL
              190       200       210       220       230       240

              250       260     
pF1KB9 GGLCPSNTSLLATSSPMPVKEEFLP
       :::::::::::::::::::::::::
CCDS43 GGLCPSNTSLLATSSPMPVKEEFLP
              250       260     




265 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:23:46 2016 done: Fri Nov  4 18:23:46 2016
 Total Scan time:  2.740 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]