FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9702, 327 aa
  1>>>pF1KB9702 327 - 327 aa - 327 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8214+/-0.000684; mu= 7.6177+/- 0.042
 mean_var=183.0359+/-37.527, 0's: 0 Z-trim(117.2): 172  B-trim: 18 in 1/53
 Lambda= 0.094800
 statistics sampled from 17691 (17870) to 17691 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.835), E-opt: 0.2 (0.549), width:  16
 Scan time:  3.420

The best scores are:                                      opt bits E(32554)
CCDS6950.1 BARHL1 gene_id:56751|Hs108|chr9         ( 327) 2214 314.0 1.1e-85
CCDS730.1 BARHL2 gene_id:343472|Hs108|chr1         ( 387) 1003 148.4 8.7e-36


>>CCDS6950.1 BARHL1 gene_id:56751|Hs108|chr9              (327 aa)
 initn: 2214 init1: 2214 opt: 2214  Z-score: 1652.0  bits: 314.0 E(32554): 1.1e-85
Smith-Waterman score: 2214; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KB9 MEGSNGFGIDSILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MEGSNGFGIDSILSHRAGSPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 TGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 AAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILI
              250       260       270       280       290       300

              310       320       
pF1KB9 HGLQGASEPPPPLPPLAGVLPRAAQPR
       :::::::::::::::::::::::::::
CCDS69 HGLQGASEPPPPLPPLAGVLPRAAQPR
              310       320       

>>CCDS730.1 BARHL2 gene_id:343472|Hs108|chr1              (387 aa)
 initn: 1075 init1: 723 opt: 1003  Z-score: 756.0  bits: 148.4 E(32554): 8.7e-36
Smith-Waterman score: 1025; 52.8% identity (67.8% similar) in 369 aa overlap (18-327:23-387)

                    10        20              30        40         
pF1KB9      MEGSNGFGIDSILSHRAGSPALPKGD--PL----LGDCRSPLELSPRSESSSDCS
                             :::.. .::  ::     .: ::    :: :: ..  .
CCDS73 MTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGT
               10        20        30        40        50        60

      50        60                          70             80      
pF1KB9 SPASPGRDCLETGTPR------------------PGGASGPG-----LDSHLQP------
       .:.::    .:   :.                  :  :..:      : .. ::      
CCDS73 APSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQP
               70        80        90       100       110       120

                     90       100       110       120       130    
pF1KB9 -----GQL-SAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAA
             :: :: .  :: ::::::.:::.: ::::::::::.:   ..:.   .  ..:.
CCDS73 PPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTS--VSSPHHTPKQESNAV
              130       140       150       160         170        

           140       150                160       170       180    
pF1KB9 -EDFRDKLDKSGSNASSD------SEYK---VKEEGDREISSSRDSPPVRLKKPRKARTA
        :.:: ::..  :... :      :. :   .::::::::.:::.::::: :::::::::
CCDS73 HESFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTA
      180       190       200       210       220       230        

          190       200       210       220       230       240    
pF1KB9 FTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELL
       :.:::: ::::::::::::::::::.:::.::::::::::::::::::::::::::::::
CCDS73 FSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELL
      240       250       260       270       280       290        

          250       260       270               280       290      
pF1KB9 AEAGNYSALQRMFPSPYFYPQSLVSNLDP------GAALY--LYRGPSAPPPALQRPLVP
       :::::::::::::::::::  ::....:       .::.:  .:: : :: : :::::::
CCDS73 AEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVP
      300       310       320       330       340       350        

        300       310       320       
pF1KB9 RILIHGLQGASEPPPPLPPLAGVLPRAAQPR
       :.:::::  ...:   : ::.. .: . .::
CCDS73 RVLIHGLGPGGQPA--LNPLSSPIPGTPHPR
      360       370         380       




327 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:25:27 2016 done: Fri Nov  4 18:25:28 2016
 Total Scan time:  3.420 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]