FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9703, 328 aa
  1>>>pF1KB9703 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8758+/-0.000706; mu= 12.8994+/- 0.043
 mean_var=189.9635+/-38.059, 0's: 0 Z-trim(117.3): 46  B-trim: 6 in 1/53
 Lambda= 0.093055
 statistics sampled from 18021 (18067) to 18021 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.555), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS7143.1 PTF1A gene_id:256297|Hs108|chr10        ( 328) 2275 316.7 1.6e-86


>>CCDS7143.1 PTF1A gene_id:256297|Hs108|chr10             (328 aa)
 initn: 2275 init1: 2275 opt: 2275  Z-score: 1666.9  bits: 316.7 E(32554): 1.6e-86
Smith-Waterman score: 2275; 99.7% identity (99.7% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KB9 MDAVLLEHFPGGLDAFPSSYFDEDDFFTDQSSRDPLEDGDELLADEQAEVEFLSHQLHEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MDAVLLEHFPGGLDAFPSSYFDEDDFFTDQSSRDPLEDGDELLADEQAEVEFLSHQLHEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CYRDGACLLLQPAPPAAPLALAPPSSGGLGEPDDGGGGGYCCETGAPPGGFPYSPGSPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 CYRDGACLLLQPAPPAAPLALAPPSSGGLGEPDDGGGGGYCCETGAPPGGFPYSPGSPPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CLAYPCAGAAVLSPGARLRGLSGAAAAAARRRRRVRSEAELQQLRQAANVRERRRMQSIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 CLAYPCAGAAVLSPGARLRGLSGAAAAAARRRRRVRSEAELQQLRQAANVRERRRMQSIN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQADLPLRGGGAGGCGGPGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 DAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQADLPLRGGGAGGCGGPGGGG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RLGGDSPGSQAQKVIICHRGTRPPSPSDPDYGLPPLAGHSLSWTDEKQLKEQNIIRTAKV
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS71 RLGGDSPGSQAQKVIICHRGTRSPSPSDPDYGLPPLAGHSLSWTDEKQLKEQNIIRTAKV
              250       260       270       280       290       300

              310       320        
pF1KB9 WTPEDPRKLNSKSSFNNIENEPPFEFVS
       ::::::::::::::::::::::::::::
CCDS71 WTPEDPRKLNSKSSFNNIENEPPFEFVS
              310       320        




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:27:55 2016 done: Sat Nov  5 01:27:55 2016
 Total Scan time:  2.710 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]