FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9710, 348 aa
  1>>>pF1KB9710 348 - 348 aa - 348 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8607+/-0.000984; mu= -0.3334+/- 0.060
 mean_var=375.0393+/-75.801, 0's: 0 Z-trim(116.4): 153  B-trim: 0 in 0/54
 Lambda= 0.066227
 statistics sampled from 16812 (16970) to 16812 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.521), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS2515.1 GBX2 gene_id:2637|Hs108|chr2            ( 348) 2343 237.0 1.7e-62
CCDS77545.1 GBX2 gene_id:2637|Hs108|chr2           ( 222) 1201 127.7 9.1e-30
CCDS43682.1 GBX1 gene_id:2636|Hs108|chr7           ( 363)  700 80.1 3.2e-15


>>CCDS2515.1 GBX2 gene_id:2637|Hs108|chr2                 (348 aa)
 initn: 2343 init1: 2343 opt: 2343  Z-score: 1235.3  bits: 237.0 E(32554): 1.7e-62
Smith-Waterman score: 2343; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)

               10        20        30        40        50        60
pF1KB9 MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPPPPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PPPALPQAALQPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLPGGFSASPQHQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PPPALPQAALQPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLPGGFSASPQHQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AAAARKFAPQPLPGGGNFDKAEALQADAEDGKGFLAKEGSLLAFSAAETVQASLVGAVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 AAAARKFAPQPLPGGGNFDKAEALQADAEDGKGFLAKEGSLLAFSAAETVQASLVGAVRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QGKDESKVEDDPKGKEESFSLESDVDYSSDDNLTGQAAHKEEDPGHALEETPPSSGAAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QGKDESKVEDDPKGKEESFSLESDVDYSSDDNLTGQAAHKEEDPGHALEETPPSSGAAGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 TTSTGKNRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRA
              250       260       270       280       290       300

              310       320       330       340        
pF1KB9 KWKRVKAGNANSKTGEPSRNPKIVVPIPVHVSRFAIRSQHQQLEQARP
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 KWKRVKAGNANSKTGEPSRNPKIVVPIPVHVSRFAIRSQHQQLEQARP
              310       320       330       340        

>>CCDS77545.1 GBX2 gene_id:2637|Hs108|chr2                (222 aa)
 initn: 1201 init1: 1201 opt: 1201  Z-score: 647.9  bits: 127.7 E(32554): 9.1e-30
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)

               10        20        30        40        50        60
pF1KB9 MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPPPPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PPPALPQAALQPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLPGGFSASPQHQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PPPALPQAALQPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMATLPGGFSASPQHQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AAAARKFAPQPLPGGGNFDKAEALQADAEDGKGFLAKEGSLLAFSAAETVQASLVGAVRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
CCDS77 AAAARKFAPQPLPGGGNFDKAEALQADAEDGKGFLAKEGSLLAFSAAETVQASLGRLCRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QGKDESKVEDDPKGKEESFSLESDVDYSSDDNLTGQAAHKEEDPGHALEETPPSSGAAGS
                                                                   
CCDS77 AVTWGSGRGCPRARERRVKGGRRPEGQGGELLAGERCGLQLG                  
              190       200       210       220                    

>>CCDS43682.1 GBX1 gene_id:2636|Hs108|chr7                (363 aa)
 initn: 801 init1: 639 opt: 700  Z-score: 386.7  bits: 80.1 E(32554): 3.2e-15
Smith-Waterman score: 947; 51.9% identity (66.7% similar) in 360 aa overlap (17-348:20-363)

                  10        20        30        40        50       
pF1KB9    MSAAFPPSLMMMQRPLGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPP
                          : .:::::::::: :: :  ::..::::::::::::.::: 
CCDS43 MQRAGGGSAPGGNGGGGGGGPGTAFSIDSLIG-PPPPRSGHLLYTGYPMFMPYRPLVLPQ
               10        20        30         40        50         

        60        70        80         90           100         110
pF1KB9 PPPPPPALPQAALQPALPPAHPHHQIPS-LPTGFCSSLAQGM----ALTSTL--MATLPG
          : : ::      .:::  :  .. . : . ::..:.:..    :::..:  .:  : 
CCDS43 ALAPAP-LPA-----GLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPD
      60              70        80        90       100       110   

              120           130           140       150       160  
pF1KB9 GFSASPQHQEAAAARKFAP----QPLPGG----GNFDKAEALQADAEDGKGFLAKEGSLL
       .: . ::.  ::::   :     .: :::    :...  : : :  .     .:.     
CCDS43 AFYG-PQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREK-----VAEPPPPP
            120       130       140       150            160       

            170       180          190          200       210      
pF1KB9 AFSAAETVQASLVGAVRGQGKDESKVE---DDPKG---KEESFSLESDVDYSSDDNLTGQ
           .::   :: .  .  ..:: :.:    :: :   .::. . .:. :   :..  : 
CCDS43 PPHFSETFP-SLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAGGP
       170        180       190       200       210       220      

        220             230       240       250       260       270
pF1KB9 AAHKEEDP------GHALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHCKK
       .:     :      : . ::  : .  :: :.  ::.:::::::::::::::::::::::
CCDS43 GALLGPKPKLKGSLGTGAEEGAPVT--AGVTAPGGKSRRRRTAFTSEQLLELEKEFHCKK
        230       240       250         260       270       280    

              280       290       300       310       320       330
pF1KB9 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGEPSRNPKIVVPIPVH
       ::::::::::::::::::::::::::::::::::.::::..:..::: ::::::::::::
CCDS43 YLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRSGEPVRNPKIVVPIPVH
          290       300       310       320       330       340    

              340         
pF1KB9 VSRFAIRSQHQQLEQ-ARP
       :.:::.::::::.:: :::
CCDS43 VNRFAVRSQHQQMEQGARP
          350       360   




348 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:27:45 2016 done: Fri Nov  4 18:27:46 2016
 Total Scan time:  3.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]