Result of FASTA (ccds) for
pF1KB9714
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9714, 382 aa
1>>>pF1KB9714 382 - 382 aa - 382 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5829+/-0.000957; mu= 13.5699+/- 0.058
mean_var=201.7498+/-43.235, 0's: 0 Z-trim(111.9): 178 B-trim: 482 in 1/50
Lambda= 0.090296
statistics sampled from 12539 (12741) to 12539 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.391), width: 16
Scan time: 3.200
The best scores are: opt bits E(32554)
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 ( 382) 2619 353.7 1.6e-97
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 ( 402) 1795 246.3 3.5e-65
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 ( 395) 1722 236.8 2.5e-62
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 ( 406) 1587 219.2 5e-57
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 612 92.2 8.1e-19
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 592 89.5 4.8e-18
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 485 75.7 8.2e-14
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 482 75.3 1.1e-13
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 469 73.6 3.5e-13
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 466 73.2 4.5e-13
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 456 71.9 1.1e-12
>>CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 (382 aa)
initn: 2619 init1: 2619 opt: 2619 Z-score: 1864.1 bits: 353.7 E(32554): 1.6e-97
Smith-Waterman score: 2619; 100.0% identity (100.0% similar) in 382 aa overlap (1-382:1-382)
10 20 30 40 50 60
pF1KB9 MLDGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLDGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 QCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AGKGTAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AGKGTAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGP
310 320 330 340 350 360
370 380
pF1KB9 LQSRVGNPIDHLYSMQNSYFTS
::::::::::::::::::::::
CCDS12 LQSRVGNPIDHLYSMQNSYFTS
370 380
>>CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 (402 aa)
initn: 1835 init1: 1038 opt: 1795 Z-score: 1283.7 bits: 246.3 E(32554): 3.5e-65
Smith-Waterman score: 1795; 68.7% identity (85.5% similar) in 387 aa overlap (1-382:24-402)
10 20 30
pF1KB9 MLDGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEG
::::.:::: .. :... ::: .::::
CCDS55 MDIATGPESLERCFPRGQTDCAKMLDGIKMEE--HALRPGPATLGVLLGSDCPHPAVCEG
10 20 30 40 50
40 50 60 70 80 90
pF1KB9 CQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGC
::: : ::::.:.:.: :::.:.:::.:.. : :.:..::.::::: ::..:::.::.::
CCDS55 CQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGC
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB9 FEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL
.: :::.:::::: . ::::.:::::::::::.:::::::::::::::::::::..:::
CCDS55 MEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSS
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB9 VSPAASDSGKSDDEESLCKSAHGAG---KGTAEEGKDHKRPKRPRTILTTQQRRAFKASF
::: ::: ::.::.. : :.: : ::....::: .:::::::::::::::::::::
CCDS55 VSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASF
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB9 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAQ
::::::::::::::::::::::::::::::::::::::::::.::::. :::.:::..
CCDS55 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQE-QQNSQRLGQEV
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB9 TNGGGSAGMEGIMNPYTALPTPQQ-LLAIEQSVY-SSDPFRQGLTPPQMPGDHMHPYGAE
:. :::.: :: : ::: ..:.::: : :::::.:::::::::::::.::: .
CCDS55 L----SSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGDHMNPYGND
300 310 320 330 340 350
340 350 360 370 380
pF1KB9 PLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
.:::.::: :::..:.::::..:..: ::.:::::::.:::::.:::.:
CCDS55 SIFHDIDSD-TSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
360 370 380 390 400
>>CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 (395 aa)
initn: 1748 init1: 935 opt: 1722 Z-score: 1232.4 bits: 236.8 E(32554): 2.5e-62
Smith-Waterman score: 1722; 67.2% identity (84.0% similar) in 387 aa overlap (1-382:24-395)
10 20 30
pF1KB9 MLDGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEG
::::.:::: .. :... ::: .::::
CCDS68 MDIATGPESLERCFPRGQTDCAKMLDGIKMEE--HALRPGPATLGVLLGSDCPHPAVCEG
10 20 30 40 50
40 50 60 70 80 90
pF1KB9 CQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGC
::: : ::::.:.:.: :::.:.:::.:.. : :.:..::.::::: ::..:::.::.::
CCDS68 CQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGC
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB9 FEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL
.: :::.:::::: . ::::.:::::::::::.:::::::::::::::::::::..:::
CCDS68 MEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSS
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB9 VSPAASDSGKSDDEESLCKSAHGAG---KGTAEEGKDHKRPKRPRTILTTQQRRAFKASF
::: ::: ::.::.. : :.: : ::....::: .:::::::::::::::::::::
CCDS68 VSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASF
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB9 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAQ
::::::::::::::::::::::::::::::::::::::::::.::::. :::.:::..
CCDS68 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQE-QQNSQRLGQEV
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB9 TNGGGSAGMEGIMNPYTALPTPQQ-LLAIEQSVY-SSDPFRQGLTPPQMPGDHMHPYGAE
:. :::.: :: : ::: ..:.::: : :::::.::::::::::. .
CCDS68 L----SSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGN-------D
300 310 320 330 340
340 350 360 370 380
pF1KB9 PLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
.:::.::: :::..:.::::..:..: ::.:::::::.:::::.:::.:
CCDS68 SIFHDIDSD-TSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
350 360 370 380 390
>>CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 (406 aa)
initn: 1766 init1: 857 opt: 1587 Z-score: 1137.2 bits: 219.2 E(32554): 5e-57
Smith-Waterman score: 1729; 66.2% identity (83.5% similar) in 394 aa overlap (1-382:24-406)
10 20 30
pF1KB9 MLDGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEG
::::.:::: .. :... ::: .::::
CCDS55 MDIATGPESLERCFPRGQTDCAKMLDGIKMEE--HALRPGPATLGVLLGSDCPHPAVCEG
10 20 30 40 50
40 50 60 70 80 90
pF1KB9 CQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGC
::: : ::::.:.:.: :::.:.:::.:.. : :.:..::.::::: ::..:::.::.::
CCDS55 CQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDYQQLFAAKCSGC
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB9 FEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL
.: :::.:::::: . ::::.:::::::::::.:::::::::::::::::::::..:::
CCDS55 MEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEKDLLSS
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB9 VSPAASDSGKSDDEESLCKSAHGAG---KGTAEEGKDHKRPKRPRTILTTQQRRAFKASF
::: ::: ::.::.. : :.: : ::....::: .:::::::::::::::::::::
CCDS55 VSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQQRRAFKASF
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB9 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAQ
::::::::::::::::::::::::::::::::::::::::::.::::. :::.:::....
CCDS55 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRHQQQQE-QQNSQRLGQGE
240 250 260 270 280 290
280 290 300 310 320
pF1KB9 TNGGGSAG-------MEGIMNPYTALPTPQQ-LLAIEQSVY-SSDPFRQGLTPPQMPGDH
. : . : :::.: :: : ::: ..:.::: : :::::.::::::::::.
CCDS55 PGPGQGLGQEVLSSRMEGMMASYTPLAPPQQQIVAMEQSPYGSSDPFQQGLTPPQMPGN-
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB9 MHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
. .:::.::: :::..:.::::..:..: ::.:::::::.:::::.:::.:
CCDS55 ------DSIFHDIDSD-TSLTSLSDCFLGSSDVGSLQARVGNPIDRLYSMQSSYFAS
360 370 380 390 400
>>CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 (359 aa)
initn: 500 init1: 322 opt: 612 Z-score: 451.4 bits: 92.2 E(32554): 8.1e-19
Smith-Waterman score: 612; 38.7% identity (64.5% similar) in 256 aa overlap (33-278:25-278)
10 20 30 40 50 60
pF1KB9 DGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLN-DSFWHEQCVQ
..: :: : :.:.::.. : :: :..
CCDS10 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVSPDLEWHAACLK
10 20 30 40 50
70 80 90 100 110
pF1KB9 CASCKEPLETTC--FYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSC
:: :.. :. :: : :: : ::: :: .::..::. : ... ...::::. ::::. :
CCDS10 CAECSQYLDETCTCFVRDGKTYCKRDYVRLFGIKCAKCQVGFSSSDLVMRARDSVYHIEC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 FCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAH
: : :: ::: :::: :.: .:::..:. : . :: . : ..:
CCDS10 FRCSVCSRQLLPGDEFSLREHELLCRADHGLLLERAAAGSPRS--PGPLPGARGLHLPDA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 GAGKGTAEEGKDHKRPK---RPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSV
:.:. : . . ::. . : ::.:. .: ..... . .. .: ..: :. ::::
CCDS10 GSGRQPALRPHVHKQTEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 RVVQVWFQNQRAKMKK----LARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTA
::..:::::.: : :: . . ::::..:. . : :... .:
CCDS10 RVIRVWFQNKRCKDKKKSILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAV
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB9 LPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCF
CCDS10 EVQTYQPPWKALSEFALQSDLDQPAFQQLVSFSESGSLGNSSGSDVTSLSSQLPDTPNSM
300 310 320 330 340 350
>>CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 (349 aa)
initn: 543 init1: 317 opt: 592 Z-score: 437.4 bits: 89.5 E(32554): 4.8e-18
Smith-Waterman score: 595; 35.0% identity (62.7% similar) in 300 aa overlap (33-314:15-310)
10 20 30 40 50 60
pF1KB9 DGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLN-DSFWHEQCVQ
:.: :: : :...::.. : :: :..
CCDS43 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLK
10 20 30 40
70 80 90 100 110
pF1KB9 CASCKEPLET--TCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSC
:: :.. :. ::: :: : ::: :: .:...::. : ... :.:::::...:::. :
CCDS43 CAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHIEC
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB9 FCCCVCERQLQKGDEFVLKEGQLLCKGDYEK-ERELLSLVSPAASDSGKSDDEESLCKSA
: : .: ::: ::::.:.: :.:..:.. :: :. .: . . : .:
CCDS43 FRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPLSP----LHPARPLQMAA
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB9 HG-AGKGTAEEGKDHKRPK---RPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGL
. ... : . . ::.:. : ::.:. .: ..... . .. .: ..: :. :::
CCDS43 EPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL
170 180 190 200 210 220
240 250 260 270 280
pF1KB9 SVRVVQVWFQNQRAKMKK----LARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIM--N
: ::..:::::.: : :: . . :::: .:. : : .... ... .: . :
CCDS43 SPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQAN
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB9 PYT--ALPTPQQLLA--IEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTS
: . : ..:. :: .. :.:
CCDS43 PVEVQSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPN
290 300 310 320 330 340
>>CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 (397 aa)
initn: 674 init1: 417 opt: 485 Z-score: 361.5 bits: 75.7 E(32554): 8.2e-14
Smith-Waterman score: 627; 38.6% identity (62.1% similar) in 272 aa overlap (18-286:16-245)
10 20 30 40 50 60
pF1KB9 MLDGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCV
.:. .: : : .: ::.. :::::.:. : :: .:.
CCDS69 MLLETGLERDRARPGAAAVCTLGGTREIP--LCAGCDQHILDRFILKALDRHWHSKCL
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 QCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCF
.:..:. :: :: : ...::: :. : :..::..: .: :.. : ::: :::: ::
CCDS69 KCSDCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCF
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 CCCVCERQLQKGDEFVLKE-GQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAH
: ::.::: :::: : : ..:.::.:::
CCDS69 ACVVCKRQLATGDEFYLMEDSRLVCKADYE------------------------------
120 130 140
180 190 200 210 220 230
pF1KB9 GAGKGTAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV
::.. . . ::::: .:..: ...:.....: :: :.::: :..::::..:::
CCDS69 -----TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVV
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB9 QVWFQNQRAKMKKLARRQQQQQQDQ--QNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQ
::::::.::: :.: . .:. : .: .: . ::... ...
CCDS69 QVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKR-----SRGGSKSDKDSVQEGQDSDAEVS
210 220 230 240 250
300 310 320 330 340 350
pF1KB9 QLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSE
CCDS69 FPDEPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYRELRPGSPYG
260 270 280 290 300 310
>>CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 (402 aa)
initn: 674 init1: 417 opt: 482 Z-score: 359.3 bits: 75.3 E(32554): 1.1e-13
Smith-Waterman score: 624; 39.5% identity (63.3% similar) in 256 aa overlap (34-286:35-250)
10 20 30 40 50 60
pF1KB9 GLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCVQCA
.: ::.. :::::.:. : :: .:..:.
CCDS69 GELGPARESAGGDLLLALLARRADLRREIPLCAGCDQHILDRFILKALDRHWHSKCLKCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCC
.:. :: :: : ...::: :. : :..::..: .: :.. : ::: :::: :: :
CCDS69 DCHTPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VCERQLQKGDEFVLKE-GQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAHGAG
::.::: :::: : : ..:.::.:::
CCDS69 VCKRQLATGDEFYLMEDSRLVCKADYE---------------------------------
130 140 150
190 200 210 220 230 240
pF1KB9 KGTAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVW
::.. . . ::::: .:..: ...:.....: :: :.::: :..::::..::::::
CCDS69 --TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVW
160 170 180 190 200
250 260 270 280 290 300
pF1KB9 FQNQRAKMKKLARRQQQQQQDQ--QNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLL
:::.::: :.: . .:. : .: .: . ::... ...
CCDS69 FQNRRAKEKRLKKDAGRQRWGQYFRNMKR-----SRGGSKSDKDSVQEGQDSDAEVSFPD
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB9 AIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGP
CCDS69 EPSLAEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPP
270 280 290 300 310 320
>>CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 (402 aa)
initn: 616 init1: 414 opt: 469 Z-score: 350.2 bits: 73.6 E(32554): 3.5e-13
Smith-Waterman score: 663; 38.0% identity (62.9% similar) in 313 aa overlap (35-324:5-309)
10 20 30 40 50 60
pF1KB9 LKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCVQCAS
: ::.: ::::::: . : :: .::::
CCDS91 MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCE
10 20 30
70 80 90 100 110 120
pF1KB9 CKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCV
:: : :: :. ::::: :. . :..::.:: ..:.:...: .:...:.::.:: : :
CCDS91 CKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARSKVFHLNCFTCMV
40 50 60 70 80 90
130 140 150 160 170
pF1KB9 CERQLQKGDE-FVLKEGQLLCKGDYE-----KERELLSL-------VSPAASDSGKSDDE
:..::. :.: .:. :....:: :: :: : :. .:: .:. ..: .
CCDS91 CNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRSLSPDLQDALQDDPK
100 110 120 130 140 150
180 190 200 210 220
pF1KB9 ESLCKSAHGAGKGTAEEGKDHKRPKR--PRTILTTQQRRAFKASFEVSSKPCRKVRETLA
:. ... .. :. .... :: ::: . ..: ...::.: .. :: :..:: ::
CCDS91 ETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLA
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB9 AETGLSVRVVQVWFQNQRAK---MKKLARRQQQQQQDQQNTQRLSSAQTNGG--GSAGME
::::..::.::::::.:.: ::.:. ... .. .:. :: . :
CCDS91 QETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPL---GGRLDESEML
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB9 GIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPP---QMPGDHMHPYGAEPLFHDLDSD
: .::: : : : : : .: :: : :.:
CCDS91 G-STPYTYYGDYQGDYYAPGSNY--DFFAHG--PPSQAQSPADSSFLAASGPGSTPLGAL
280 290 300 310 320
350 360 370 380
pF1KB9 DTSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
CCDS91 EPPLAGPHAADNPRFTDMISHPDTPSPEPGLPGTLHPMPGEVFSGGPSPPFPMSGTSGYS
330 340 350 360 370 380
>>CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 (390 aa)
initn: 670 init1: 404 opt: 466 Z-score: 348.2 bits: 73.2 E(32554): 4.5e-13
Smith-Waterman score: 619; 40.9% identity (62.8% similar) in 242 aa overlap (24-264:19-226)
10 20 30 40 50 60
pF1KB9 MLDGLKMEENFQSAIDTSASFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCV
.:: .. : ::.. :::.:.:.. : :: .:.
CCDS13 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCL
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 QCASCKEPLETTCFYRDKKLYCKYDYEKLFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCF
.::.:. : :: : ..::: :. : :..:: .: ..: :.. : .:: :::: ::
CCDS13 KCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQGIPPTQVVRKAQDFVYHLHCF
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 CCCVCERQLQKGDEFVLKE-GQLLCKGDYEKERELLSLVSPAASDSGKSDDEESLCKSAH
: .:.::: :::: : : :.:.:: ::: .. .:: :.
CCDS13 ACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQ--------------NDDSEA------
120 130 140 150
180 190 200 210 220 230
pF1KB9 GAGKGTAEEGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV
:: ::::: .:..: ...: ... : :: :.::: :..::::..:::
CCDS13 GA--------------KRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVV
160 170 180 190 200
240 250 260 270 280 290
pF1KB9 QVWFQNQRAKMKKLARRQQQQQQDQQNTQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQL
::::::.::: :.: . ... :
CCDS13 QVWFQNRRAKEKRLKKDAGRHRWGQFYKSVKRSRGSSKQEKESSAEDCGVSDSELSFRED
210 220 230 240 250 260
382 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:29:01 2016 done: Fri Nov 4 18:29:01 2016
Total Scan time: 3.200 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]