FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9717, 395 aa
  1>>>pF1KB9717 395 - 395 aa - 395 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4891+/-0.000952; mu= 12.2004+/- 0.057
 mean_var=113.6201+/-24.310, 0's: 0 Z-trim(109.3): 9  B-trim: 611 in 1/49
 Lambda= 0.120322
 statistics sampled from 10780 (10785) to 10780 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.331), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS34183.1 GTF2H2 gene_id:2966|Hs108|chr5         ( 395) 2713 481.8 4.8e-136
CCDS43325.1 GTF2H2C gene_id:728340|Hs108|chr5      ( 395) 2701 479.7  2e-135


>>CCDS34183.1 GTF2H2 gene_id:2966|Hs108|chr5              (395 aa)
 initn: 2713 init1: 2713 opt: 2713  Z-score: 2556.0  bits: 481.8 E(32554): 4.8e-136
Smith-Waterman score: 2713; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KB9 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
              310       320       330       340       350       360

              370       380       390     
pF1KB9 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
       :::::::::::::::::::::::::::::::::::
CCDS34 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
              370       380       390     

>>CCDS43325.1 GTF2H2C gene_id:728340|Hs108|chr5           (395 aa)
 initn: 2701 init1: 2701 opt: 2701  Z-score: 2544.7  bits: 479.7 E(32554): 2e-135
Smith-Waterman score: 2701; 99.2% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KB9 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
       ::::::::::::.:::::::::::::::::.:::::::::::::::::::::::::::::
CCDS43 SGNPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS43 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
              310       320       330       340       350       360

              370       380       390     
pF1KB9 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
       :::::::::::::::::::::::::::::::::::
CCDS43 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
              370       380       390     




395 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:30:15 2016 done: Fri Nov  4 18:30:16 2016
 Total Scan time:  2.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]