Result of FASTA (omim) for
pF1KB9717
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9717, 395 aa
1>>>pF1KB9717 395 - 395 aa - 395 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6474+/-0.000379; mu= 17.1202+/- 0.024
mean_var=117.1654+/-25.498, 0's: 0 Z-trim(116.1): 9 B-trim: 1334 in 1/51
Lambda= 0.118488
statistics sampled from 26954 (26963) to 26954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.316), width: 16
Scan time: 8.880
The best scores are: opt bits E(85289)
XP_016864894 (OMIM: 601748) PREDICTED: general tra ( 395) 2713 474.8 1.6e-133
XP_016864895 (OMIM: 601748) PREDICTED: general tra ( 395) 2713 474.8 1.6e-133
XP_016864892 (OMIM: 601748) PREDICTED: general tra ( 395) 2713 474.8 1.6e-133
XP_016864893 (OMIM: 601748) PREDICTED: general tra ( 395) 2713 474.8 1.6e-133
NP_001506 (OMIM: 601748) general transcription fac ( 395) 2713 474.8 1.6e-133
>>XP_016864894 (OMIM: 601748) PREDICTED: general transcr (395 aa)
initn: 2713 init1: 2713 opt: 2713 Z-score: 2518.4 bits: 474.8 E(85289): 1.6e-133
Smith-Waterman score: 2713; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)
10 20 30 40 50 60
pF1KB9 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
310 320 330 340 350 360
370 380 390
pF1KB9 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
:::::::::::::::::::::::::::::::::::
XP_016 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
370 380 390
>>XP_016864895 (OMIM: 601748) PREDICTED: general transcr (395 aa)
initn: 2713 init1: 2713 opt: 2713 Z-score: 2518.4 bits: 474.8 E(85289): 1.6e-133
Smith-Waterman score: 2713; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)
10 20 30 40 50 60
pF1KB9 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
310 320 330 340 350 360
370 380 390
pF1KB9 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
:::::::::::::::::::::::::::::::::::
XP_016 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
370 380 390
>>XP_016864892 (OMIM: 601748) PREDICTED: general transcr (395 aa)
initn: 2713 init1: 2713 opt: 2713 Z-score: 2518.4 bits: 474.8 E(85289): 1.6e-133
Smith-Waterman score: 2713; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)
10 20 30 40 50 60
pF1KB9 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
310 320 330 340 350 360
370 380 390
pF1KB9 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
:::::::::::::::::::::::::::::::::::
XP_016 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
370 380 390
>>XP_016864893 (OMIM: 601748) PREDICTED: general transcr (395 aa)
initn: 2713 init1: 2713 opt: 2713 Z-score: 2518.4 bits: 474.8 E(85289): 1.6e-133
Smith-Waterman score: 2713; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)
10 20 30 40 50 60
pF1KB9 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
310 320 330 340 350 360
370 380 390
pF1KB9 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
:::::::::::::::::::::::::::::::::::
XP_016 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
370 380 390
>>NP_001506 (OMIM: 601748) general transcription factor (395 aa)
initn: 2713 init1: 2713 opt: 2713 Z-score: 2518.4 bits: 474.8 E(85289): 1.6e-133
Smith-Waterman score: 2713; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)
10 20 30 40 50 60
pF1KB9 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
310 320 330 340 350 360
370 380 390
pF1KB9 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
:::::::::::::::::::::::::::::::::::
NP_001 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
370 380 390
395 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:30:16 2016 done: Fri Nov 4 18:30:17 2016
Total Scan time: 8.880 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]