Result of FASTA (ccds) for
pF1KB9731
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9731, 474 aa
1>>>pF1KB9731 474 - 474 aa - 474 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7474+/-0.000863; mu= 13.1508+/- 0.053
mean_var=122.0177+/-23.824, 0's: 0 Z-trim(111.1): 126 B-trim: 0 in 0/51
Lambda= 0.116108
statistics sampled from 12017 (12143) to 12017 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.373), width: 16
Scan time: 3.410
The best scores are: opt bits E(32554)
CCDS13330.1 HNF4A gene_id:3172|Hs108|chr20 ( 474) 3183 544.0 1.2e-154
CCDS74728.1 HNF4A gene_id:3172|Hs108|chr20 ( 449) 2945 504.2 1.2e-142
CCDS42876.1 HNF4A gene_id:3172|Hs108|chr20 ( 452) 2945 504.2 1.2e-142
CCDS46605.1 HNF4A gene_id:3172|Hs108|chr20 ( 464) 2812 481.9 6.2e-136
CCDS46604.1 HNF4A gene_id:3172|Hs108|chr20 ( 442) 2574 442.0 6e-124
CCDS13331.1 HNF4A gene_id:3172|Hs108|chr20 ( 417) 2497 429.1 4.3e-120
CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 ( 395) 2259 389.2 4.2e-108
CCDS6220.2 HNF4G gene_id:3174|Hs108|chr8 ( 445) 2080 359.3 4.9e-99
CCDS83303.1 HNF4G gene_id:3174|Hs108|chr8 ( 408) 1946 336.8 2.6e-92
CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 ( 462) 907 162.8 7.1e-40
CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 907 162.8 7.9e-40
CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 903 162.1 1.1e-39
CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 896 160.9 2e-39
CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 787 142.7 7.3e-34
CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 ( 423) 786 142.5 8.3e-34
CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 602 111.7 1.9e-24
CCDS45359.1 NR2F2 gene_id:7026|Hs108|chr15 ( 261) 431 82.9 4.5e-16
CCDS45358.1 NR2F2 gene_id:7026|Hs108|chr15 ( 281) 431 82.9 4.8e-16
CCDS41821.1 NR2C1 gene_id:7181|Hs108|chr12 ( 467) 431 83.1 7.2e-16
CCDS44953.1 NR2C1 gene_id:7181|Hs108|chr12 ( 483) 431 83.1 7.3e-16
CCDS9051.1 NR2C1 gene_id:7181|Hs108|chr12 ( 603) 431 83.1 8.7e-16
CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3 ( 596) 414 80.3 6.2e-15
CCDS2621.1 NR2C2 gene_id:7182|Hs108|chr3 ( 615) 414 80.3 6.4e-15
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 402 78.2 1.9e-14
CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 393 76.7 5.8e-14
CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 389 76.0 8e-14
CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 389 76.0 9e-14
CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 387 75.7 1.1e-13
CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 381 74.7 2.2e-13
CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 376 73.8 3.7e-13
CCDS42317.1 RARA gene_id:5914|Hs108|chr17 ( 457) 377 74.0 3.7e-13
CCDS11366.1 RARA gene_id:5914|Hs108|chr17 ( 462) 377 74.0 3.8e-13
CCDS2201.1 NR4A2 gene_id:4929|Hs108|chr2 ( 598) 369 72.7 1.2e-12
CCDS73751.1 NR2E3 gene_id:10002|Hs108|chr15 ( 367) 363 71.6 1.6e-12
CCDS73750.1 NR2E3 gene_id:10002|Hs108|chr15 ( 410) 363 71.6 1.7e-12
CCDS6744.1 NR4A3 gene_id:8013|Hs108|chr9 ( 443) 358 70.8 3.3e-12
CCDS6743.1 NR4A3 gene_id:8013|Hs108|chr9 ( 626) 357 70.8 4.9e-12
CCDS6742.1 NR4A3 gene_id:8013|Hs108|chr9 ( 637) 357 70.8 4.9e-12
CCDS58060.1 ESRRG gene_id:2104|Hs108|chr1 ( 396) 352 69.8 6.1e-12
CCDS2641.1 THRB gene_id:7068|Hs108|chr3 ( 461) 353 70.0 6.1e-12
CCDS42316.1 THRA gene_id:7067|Hs108|chr17 ( 410) 346 68.8 1.2e-11
CCDS58546.1 THRA gene_id:7067|Hs108|chr17 ( 451) 346 68.8 1.3e-11
CCDS11360.1 THRA gene_id:7067|Hs108|chr17 ( 490) 346 68.8 1.4e-11
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 345 68.7 1.9e-11
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 345 68.7 1.9e-11
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 345 68.8 2e-11
CCDS30856.1 RORC gene_id:6097|Hs108|chr1 ( 497) 340 67.8 2.9e-11
CCDS1004.1 RORC gene_id:6097|Hs108|chr1 ( 518) 340 67.8 3e-11
CCDS8757.1 VDR gene_id:7421|Hs108|chr12 ( 427) 337 67.3 3.7e-11
CCDS6646.1 RORB gene_id:6096|Hs108|chr9 ( 459) 337 67.3 3.9e-11
>>CCDS13330.1 HNF4A gene_id:3172|Hs108|chr20 (474 aa)
initn: 3183 init1: 3183 opt: 3183 Z-score: 2889.7 bits: 544.0 E(32554): 1.2e-154
Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 474 aa overlap (1-474:1-474)
10 20 30 40 50 60
pF1KB9 MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 AICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 FRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 GLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEW
370 380 390 400 410 420
430 440 450 460 470
pF1KB9 PRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
430 440 450 460 470
>>CCDS74728.1 HNF4A gene_id:3172|Hs108|chr20 (449 aa)
initn: 2945 init1: 2945 opt: 2945 Z-score: 2674.6 bits: 504.2 E(32554): 1.2e-142
Smith-Waterman score: 2945; 100.0% identity (100.0% similar) in 436 aa overlap (39-474:14-449)
10 20 30 40 50 60
pF1KB9 DMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALCAICGDRAT
::::::::::::::::::::::::::::::
CCDS74 MSDWGQGFPQDPPDTSPSEGTNLNAPNSLGVSALCAICGDRAT
10 20 30 40
70 80 90 100 110 120
pF1KB9 GKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 AVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 ESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGND
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 YIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 YIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKI
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 KRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDN
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 LLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAA
350 360 370 380 390 400
430 440 450 460 470
pF1KB9 TPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
410 420 430 440
>>CCDS42876.1 HNF4A gene_id:3172|Hs108|chr20 (452 aa)
initn: 2945 init1: 2945 opt: 2945 Z-score: 2674.5 bits: 504.2 E(32554): 1.2e-142
Smith-Waterman score: 2945; 100.0% identity (100.0% similar) in 436 aa overlap (39-474:17-452)
10 20 30 40 50 60
pF1KB9 DMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALCAICGDRAT
::::::::::::::::::::::::::::::
CCDS42 MVSVNAPLGAPVESSYDTSPSEGTNLNAPNSLGVSALCAICGDRAT
10 20 30 40
70 80 90 100 110 120
pF1KB9 GKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 AVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 ESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGND
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 YIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKI
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 KRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDN
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 LLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAA
350 360 370 380 390 400
430 440 450 460 470
pF1KB9 TPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
410 420 430 440 450
>>CCDS46605.1 HNF4A gene_id:3172|Hs108|chr20 (464 aa)
initn: 2783 init1: 2783 opt: 2812 Z-score: 2554.0 bits: 481.9 E(32554): 6.2e-136
Smith-Waterman score: 3061; 97.7% identity (97.9% similar) in 474 aa overlap (1-474:1-464)
10 20 30 40 50 60
pF1KB9 MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 AICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 FRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 DVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 GLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEW
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQM---
370 380 390 400 410
430 440 450 460 470
pF1KB9 PRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
.::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 -------STPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
420 430 440 450 460
>>CCDS46604.1 HNF4A gene_id:3172|Hs108|chr20 (442 aa)
initn: 2545 init1: 2545 opt: 2574 Z-score: 2338.8 bits: 442.0 E(32554): 6e-124
Smith-Waterman score: 2823; 97.5% identity (97.7% similar) in 436 aa overlap (39-474:17-442)
10 20 30 40 50 60
pF1KB9 DMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALCAICGDRAT
::::::::::::::::::::::::::::::
CCDS46 MVSVNAPLGAPVESSYDTSPSEGTNLNAPNSLGVSALCAICGDRAT
10 20 30 40
70 80 90 100 110 120
pF1KB9 GKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 AVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 ESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGND
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 YIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKI
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 KRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDN
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 LLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAA
::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS46 LLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQM----------S
350 360 370 380 390
430 440 450 460 470
pF1KB9 TPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
400 410 420 430 440
>>CCDS13331.1 HNF4A gene_id:3172|Hs108|chr20 (417 aa)
initn: 2495 init1: 2495 opt: 2497 Z-score: 2269.4 bits: 429.1 E(32554): 4.3e-120
Smith-Waterman score: 2501; 95.3% identity (95.8% similar) in 403 aa overlap (1-389:1-403)
10 20 30 40 50 60
pF1KB9 MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 AICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 FRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 GLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKL
310 320 330 340 350 360
370 380 390 400
pF1KB9 FGMAKIDNLLQEMLLGG-------------SPSDAPHA-HHPLHPHLMQEHMGTNVIVAN
::::::::::::::::: ::.: ::. ::
CCDS13 FGMAKIDNLLQEMLLGGPCQAQEGRGWSGDSPGDRPHTVSSPLSSLASPLCRFGQVA
370 380 390 400 410
410 420 430 440 450 460
pF1KB9 TMPTHLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQP
>>CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 (395 aa)
initn: 2257 init1: 2257 opt: 2259 Z-score: 2054.3 bits: 389.2 E(32554): 4.2e-108
Smith-Waterman score: 2263; 94.8% identity (95.3% similar) in 365 aa overlap (39-389:17-381)
10 20 30 40 50 60
pF1KB9 DMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALCAICGDRAT
::::::::::::::::::::::::::::::
CCDS68 MVSVNAPLGAPVESSYDTSPSEGTNLNAPNSLGVSALCAICGDRAT
10 20 30 40
70 80 90 100 110 120
pF1KB9 GKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 AVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 ESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGND
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 YIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKI
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 KRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDN
290 300 310 320 330 340
370 380 390 400 410
pF1KB9 LLQEMLLGG-------------SPSDAPHA-HHPLHPHLMQEHMGTNVIVANTMPTHLSN
::::::::: ::.: ::. ::
CCDS68 LLQEMLLGGPCQAQEGRGWSGDSPGDRPHTVSSPLSSLASPLCRFGQVA
350 360 370 380 390
420 430 440 450 460 470
pF1KB9 GQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
>>CCDS6220.2 HNF4G gene_id:3174|Hs108|chr8 (445 aa)
initn: 2028 init1: 1163 opt: 2080 Z-score: 1891.5 bits: 359.3 E(32554): 4.9e-99
Smith-Waterman score: 2153; 71.8% identity (86.8% similar) in 447 aa overlap (10-456:1-434)
10 20 30 40 50 60
pF1KB9 MRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALC
::::.:: .:::.:::::::..:.: ..:.: : :..:. .. ::. ::
CCDS62 MDMANYSEVLDPTYTTLEFETMQILYNSSDSSAPE-TSMNTTDN-GVNCLC
10 20 30 40
70 80 90 100 110 120
pF1KB9 AICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKC
:::::::::::::::::::::::::::.::.:.::::::::::::::::::::::::.::
CCDS62 AICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFSRQCVVDKDKRNQCRYCRLRKC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 FRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKK
::::::::::::::::::::::... :..::::.: :::: ::::. : . :: .::
CCDS62 FRAGMKKEAVQNERDRISTRRSTFDGSNIPSINTLAQAEVRSRQISVSSPGSSTDINVKK
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 IASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK
::::.:::::::.::::::::::::::::::::::::::::::::::::::::::::..:
CCDS62 IASIGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 DVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK
:.:::::.:.. :. :. :.:::. :.::::: ::::.:::::::: ::::.:::::::
CCDS62 DILLLGNNYVIHRNSCEV-EISRVANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAK
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 GLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKL
::::: ::: .: :::..:::::::::::::::::::::::::::::::::::::::.::
CCDS62 GLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 FGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEW
:::.:::::::::::::. .:. : :::.:::: :. . ..:. . : : . :.
CCDS62 FGMVKIDNLLQEMLLGGASNDGSHLHHPMHPHLSQDPLTGQTILLGPMSTLVHADQI---
350 360 370 380 390 400
430 440 450 460 470
pF1KB9 PRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTITKQEVI
.::::: :::: :::.: ::. . ...:
CCDS62 -------STPETPLPSPPQGSGQEQYKIAANQASVISHQHLSKQKQL
410 420 430 440
>>CCDS83303.1 HNF4G gene_id:3174|Hs108|chr8 (408 aa)
initn: 2028 init1: 1163 opt: 1946 Z-score: 1770.8 bits: 336.8 E(32554): 2.6e-92
Smith-Waterman score: 2019; 74.1% identity (87.3% similar) in 402 aa overlap (55-456:7-397)
30 40 50 60 70 80
pF1KB9 TLEFENVQVLTMGNDTSPSEGTNLNAPNSLGVSALCAICGDRATGKHYGASSCDGCKGFF
::. ::::::::::::::::::::::::::
CCDS83 MNTTDNGVNCLCAICGDRATGKHYGASSCDGCKGFF
10 20 30
90 100 110 120 130 140
pF1KB9 RRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSY
:::.::.:.::::::::::::::::::::::::.::::::::::::::::::::::::..
CCDS83 RRSIRKSHVYSCRFSRQCVVDKDKRNQCRYCRLRKCFRAGMKKEAVQNERDRISTRRSTF
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB9 EDSSLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKY
. :..::::.: :::: ::::. : . :: .::::::.:::::::.:::::::::::
CCDS83 DGSNIPSINTLAQAEVRSRQISVSSPGSSTDINVKKIASIGDVCESMKQQLLVLVEWAKY
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB9 IPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRV
:::::::::::::::::::::::::::::::::..::.:::::.:.. :. :. :.:::
CCDS83 IPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILLLGNNYVIHRNSCEV-EISRV
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB9 SIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYIN
. :.::::: ::::.:::::::: ::::.:::::::::::: ::: .: :::..::::::
CCDS83 ANRVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGLSDPVKIKNMRFQVQIGLEDYIN
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB9 DRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGSPSDAPH
:::::::::::::::::::::::::::::::::.:::::.:::::::::::::. .:. :
CCDS83 DRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGMVKIDNLLQEMLLGGASNDGSH
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB9 AHHPLHPHLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSE
:::.:::: :. . ..:. . : : . :. .::::: :::: :::.:
CCDS83 LHHPMHPHLSQDPLTGQTILLGPMSTLVHADQI----------STPETPLPSPPQGSGQE
340 350 360 370 380
450 460 470
pF1KB9 PYKLLPGAVATIVKPLSAIPQPTITKQEVI
::. . ...:
CCDS83 QYKIAANQASVISHQHLSKQKQL
390 400
>>CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 (462 aa)
initn: 910 init1: 515 opt: 907 Z-score: 829.4 bits: 162.8 E(32554): 7.1e-40
Smith-Waterman score: 909; 41.0% identity (70.5% similar) in 366 aa overlap (34-384:101-459)
10 20 30 40 50
pF1KB9 SKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGTN--LNAP-NSLGVSA--
.. ..: .: : : :..: . : :
CCDS35 PMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASF
80 90 100 110 120 130
60 70 80 90 100 110
pF1KB9 ---LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYC
.:::::::..:::::. ::.::::::.:.:::. :.:: ...:..:: .::.:.::
CCDS35 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC
140 150 160 170 180 190
120 130 140 150 160
pF1KB9 RLKKCFRAGMKKEAVQNERDRISTRR------SSYEDSSLPSINALLQAEVLSRQITSPV
: .::. :::.::::.::.: . : .: . ..: .. .:.::. . :
CCDS35 RYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMP-VERILEAELAVEPKTETY
200 210 220 230 240
170 180 190 200 210 220
pF1KB9 SGINGDIRAKKIAS-IADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHL
: . .. . ....:.. .::..:::::: :: : :::::::: :::: .: :
CCDS35 VEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL
250 260 270 280 290 300
230 240 250 260 270 280
pF1KB9 LLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAY
. . ..::.. :: .::.. : :. . : .. . :.: ::: ....:.: .: .
CCDS35 IASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGC
310 320 330 340 350 360
290 300 310 320 330 340
pF1KB9 LKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSIT
:.::..:.::.::::.:.... :: .: .::: : . . .. :::..::: ::.:.::
CCDS35 LRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIG
370 380 390 400 410 420
350 360 370 380 390 400
pF1KB9 WQMIEQIQFIKLFGMAKIDNLLQEMLLGGSPSDAPHAHHPLHPHLMQEHMGTNVIVANTM
. .:.. :.::.: . ::..:.::: .:::
CCDS35 LKCLEHLFFFKLIGDTPIDTFLMEML------EAPHQMT
430 440 450 460
410 420 430 440 450 460
pF1KB9 PTHLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAVATIVKPLSAIPQPTI
474 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:34:31 2016 done: Fri Nov 4 18:34:32 2016
Total Scan time: 3.410 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]