Result of FASTA (ccds) for
pF1KB9738
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9738, 503 aa
1>>>pF1KB9738 503 - 503 aa - 503 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4002+/-0.000858; mu= 1.0211+/- 0.052
mean_var=251.0477+/-51.305, 0's: 0 Z-trim(115.9): 41 B-trim: 151 in 1/52
Lambda= 0.080946
statistics sampled from 16482 (16516) to 16482 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.507), width: 16
Scan time: 3.610
The best scores are: opt bits E(32554)
CCDS7703.1 IRF7 gene_id:3665|Hs108|chr11 ( 503) 3557 428.2 1e-119
CCDS7705.1 IRF7 gene_id:3665|Hs108|chr11 ( 516) 3519 423.8 2.3e-118
CCDS7704.1 IRF7 gene_id:3665|Hs108|chr11 ( 474) 1769 219.4 7.1e-57
>>CCDS7703.1 IRF7 gene_id:3665|Hs108|chr11 (503 aa)
initn: 3557 init1: 3557 opt: 3557 Z-score: 2262.7 bits: 428.2 E(32554): 1e-119
Smith-Waterman score: 3557; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)
10 20 30 40 50 60
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
430 440 450 460 470 480
490 500
pF1KB9 CLSSANSLYDDIECFLMELEQPA
:::::::::::::::::::::::
CCDS77 CLSSANSLYDDIECFLMELEQPA
490 500
>>CCDS7705.1 IRF7 gene_id:3665|Hs108|chr11 (516 aa)
initn: 3519 init1: 3519 opt: 3519 Z-score: 2238.6 bits: 423.8 E(32554): 2.3e-118
Smith-Waterman score: 3519; 100.0% identity (100.0% similar) in 497 aa overlap (7-503:20-516)
10 20 30 40
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
:::::::::::::::::::::::::::::::::::::::::
CCDS77 MPVPERPAAGPDSPRPGTRRAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 PGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB9 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB9 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB9 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
430 440 450 460 470 480
470 480 490 500
pF1KB9 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
::::::::::::::::::::::::::::::::::::
CCDS77 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
490 500 510
>>CCDS7704.1 IRF7 gene_id:3665|Hs108|chr11 (474 aa)
initn: 1730 init1: 1730 opt: 1769 Z-score: 1134.6 bits: 219.4 E(32554): 7.1e-57
Smith-Waterman score: 3282; 94.2% identity (94.2% similar) in 503 aa overlap (1-503:1-474)
10 20 30 40 50 60
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG-------------
190 200 210 220
250 260 270 280 290 300
pF1KB9 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ----------------EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
230 240 250 260 270
310 320 330 340 350 360
pF1KB9 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB9 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
400 410 420 430 440 450
490 500
pF1KB9 CLSSANSLYDDIECFLMELEQPA
:::::::::::::::::::::::
CCDS77 CLSSANSLYDDIECFLMELEQPA
460 470
503 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:28:56 2016 done: Sat Nov 5 01:28:56 2016
Total Scan time: 3.610 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]