Result of FASTA (omim) for
pF1KB9738
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9738, 503 aa
1>>>pF1KB9738 503 - 503 aa - 503 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6688+/-0.000346; mu= -1.0011+/- 0.021
mean_var=282.9391+/-61.310, 0's: 0 Z-trim(123.4): 59 B-trim: 730 in 1/55
Lambda= 0.076248
statistics sampled from 43002 (43072) to 43002 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.505), width: 16
Scan time: 9.910
The best scores are: opt bits E(85289)
NP_001563 (OMIM: 605047,616345) interferon regulat ( 503) 3557 404.5 3.6e-112
XP_011518368 (OMIM: 605047,616345) PREDICTED: inte ( 502) 3539 402.6 1.4e-111
XP_005252963 (OMIM: 605047,616345) PREDICTED: inte ( 516) 3519 400.4 6.6e-111
NP_004022 (OMIM: 605047,616345) interferon regulat ( 516) 3519 400.4 6.6e-111
XP_005252964 (OMIM: 605047,616345) PREDICTED: inte ( 515) 3501 398.4 2.6e-110
NP_004020 (OMIM: 605047,616345) interferon regulat ( 474) 1769 207.8 5.5e-53
XP_005252966 (OMIM: 605047,616345) PREDICTED: inte ( 487) 1769 207.8 5.7e-53
XP_016873163 (OMIM: 605047,616345) PREDICTED: inte ( 210) 1464 174.0 3.8e-43
XP_011514464 (OMIM: 607218,612245,612251) PREDICTE ( 488) 394 56.6 1.9e-07
XP_011514465 (OMIM: 607218,612245,612251) PREDICTE ( 488) 394 56.6 1.9e-07
XP_011514466 (OMIM: 607218,612245,612251) PREDICTE ( 488) 394 56.6 1.9e-07
NP_001092097 (OMIM: 607218,612245,612251) interfer ( 498) 381 55.2 5.3e-07
NP_116032 (OMIM: 607218,612245,612251) interferon ( 498) 381 55.2 5.3e-07
NP_001092100 (OMIM: 607218,612245,612251) interfer ( 498) 381 55.2 5.3e-07
XP_011514463 (OMIM: 607218,612245,612251) PREDICTE ( 504) 381 55.2 5.3e-07
XP_011514461 (OMIM: 607218,612245,612251) PREDICTE ( 514) 381 55.2 5.4e-07
XP_005250374 (OMIM: 607218,612245,612251) PREDICTE ( 514) 381 55.2 5.4e-07
XP_011514462 (OMIM: 607218,612245,612251) PREDICTE ( 514) 381 55.2 5.4e-07
XP_006716037 (OMIM: 607218,612245,612251) PREDICTE ( 514) 381 55.2 5.4e-07
NP_001092099 (OMIM: 607218,612245,612251) interfer ( 514) 381 55.2 5.4e-07
XP_011514460 (OMIM: 607218,612245,612251) PREDICTE ( 514) 381 55.2 5.4e-07
NP_001184052 (OMIM: 603734,616532) interferon regu ( 392) 361 52.9 2e-06
NP_001184055 (OMIM: 603734,616532) interferon regu ( 281) 356 52.2 2.3e-06
NP_001184054 (OMIM: 603734,616532) interferon regu ( 281) 356 52.2 2.3e-06
NP_001193625 (OMIM: 119300,119500,607199,608864) i ( 372) 350 51.6 4.5e-06
NP_001229381 (OMIM: 607218,612245,612251) interfer ( 412) 349 51.6 5.3e-06
NP_006138 (OMIM: 119300,119500,607199,608864) inte ( 467) 350 51.7 5.3e-06
NP_001182215 (OMIM: 601900,611724) interferon regu ( 450) 298 46.0 0.00027
XP_006715153 (OMIM: 601900,611724) PREDICTED: inte ( 415) 290 45.1 0.00048
NP_002451 (OMIM: 601900,611724) interferon regulat ( 451) 290 45.1 0.00051
>>NP_001563 (OMIM: 605047,616345) interferon regulatory (503 aa)
initn: 3557 init1: 3557 opt: 3557 Z-score: 2134.8 bits: 404.5 E(85289): 3.6e-112
Smith-Waterman score: 3557; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503)
10 20 30 40 50 60
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
430 440 450 460 470 480
490 500
pF1KB9 CLSSANSLYDDIECFLMELEQPA
:::::::::::::::::::::::
NP_001 CLSSANSLYDDIECFLMELEQPA
490 500
>>XP_011518368 (OMIM: 605047,616345) PREDICTED: interfer (502 aa)
initn: 2603 init1: 2603 opt: 3539 Z-score: 2124.1 bits: 402.6 E(85289): 1.4e-111
Smith-Waterman score: 3539; 99.8% identity (99.8% similar) in 503 aa overlap (1-503:1-502)
10 20 30 40 50 60
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VYALSRELCWR-GPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
130 140 150 160 170
190 200 210 220 230 240
pF1KB9 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
420 430 440 450 460 470
490 500
pF1KB9 CLSSANSLYDDIECFLMELEQPA
:::::::::::::::::::::::
XP_011 CLSSANSLYDDIECFLMELEQPA
480 490 500
>>XP_005252963 (OMIM: 605047,616345) PREDICTED: interfer (516 aa)
initn: 3519 init1: 3519 opt: 3519 Z-score: 2112.1 bits: 400.4 E(85289): 6.6e-111
Smith-Waterman score: 3519; 100.0% identity (100.0% similar) in 497 aa overlap (7-503:20-516)
10 20 30 40
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
:::::::::::::::::::::::::::::::::::::::::
XP_005 MPVPERPAAGPDSPRPGTRRAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 PGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB9 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB9 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB9 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
430 440 450 460 470 480
470 480 490 500
pF1KB9 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
::::::::::::::::::::::::::::::::::::
XP_005 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
490 500 510
>>NP_004022 (OMIM: 605047,616345) interferon regulatory (516 aa)
initn: 3519 init1: 3519 opt: 3519 Z-score: 2112.1 bits: 400.4 E(85289): 6.6e-111
Smith-Waterman score: 3519; 100.0% identity (100.0% similar) in 497 aa overlap (7-503:20-516)
10 20 30 40
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
:::::::::::::::::::::::::::::::::::::::::
NP_004 MPVPERPAAGPDSPRPGTRRAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 PGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPG
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB9 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB9 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB9 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
430 440 450 460 470 480
470 480 490 500
pF1KB9 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
::::::::::::::::::::::::::::::::::::
NP_004 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
490 500 510
>>XP_005252964 (OMIM: 605047,616345) PREDICTED: interfer (515 aa)
initn: 2603 init1: 2603 opt: 3501 Z-score: 2101.4 bits: 398.4 E(85289): 2.6e-110
Smith-Waterman score: 3501; 99.8% identity (99.8% similar) in 497 aa overlap (7-503:20-515)
10 20 30 40
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
:::::::::::::::::::::::::::::::::::::::::
XP_005 MPVPERPAAGPDSPRPGTRRAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_005 LRDNSGDPADPHKVYALSRELCWR-GPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
130 140 150 160 170
170 180 190 200 210 220
pF1KB9 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB9 PGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPG
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB9 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
360 370 380 390 400 410
410 420 430 440 450 460
pF1KB9 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
420 430 440 450 460 470
470 480 490 500
pF1KB9 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
::::::::::::::::::::::::::::::::::::
XP_005 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
480 490 500 510
>>NP_004020 (OMIM: 605047,616345) interferon regulatory (474 aa)
initn: 1730 init1: 1730 opt: 1769 Z-score: 1072.2 bits: 207.8 E(85289): 5.5e-53
Smith-Waterman score: 3282; 94.2% identity (94.2% similar) in 503 aa overlap (1-503:1-474)
10 20 30 40 50 60
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAV
:::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG-------------
190 200 210 220
250 260 270 280 290 300
pF1KB9 ETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
::::::::::::::::::::::::::::::::::::::::::::
NP_004 ----------------EAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTV
230 240 250 260 270
310 320 330 340 350 360
pF1KB9 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB9 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRAR
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB9 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSL
400 410 420 430 440 450
490 500
pF1KB9 CLSSANSLYDDIECFLMELEQPA
:::::::::::::::::::::::
NP_004 CLSSANSLYDDIECFLMELEQPA
460 470
>>XP_005252966 (OMIM: 605047,616345) PREDICTED: interfer (487 aa)
initn: 1730 init1: 1730 opt: 1769 Z-score: 1072.0 bits: 207.8 E(85289): 5.7e-53
Smith-Waterman score: 3244; 94.2% identity (94.2% similar) in 497 aa overlap (7-503:20-487)
10 20 30 40
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
:::::::::::::::::::::::::::::::::::::::::
XP_005 MPVPERPAAGPDSPRPGTRRAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVM
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRDNSGDPADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGPFLAHTHAGLQ
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APGPLPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 PGLPAGELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPG
:::::::::::::::::::::::::::::::
XP_005 -----------------------------EAAAPESPHQAEPYLSPSPSACTAVQEPSPG
250 260 270
290 300 310 320 330 340
pF1KB9 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRATDPQQVAFPSPAELPDQKQLRYTE
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB9 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDTPIFDF
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB9 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHLEGTQR
400 410 420 430 440 450
470 480 490 500
pF1KB9 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
::::::::::::::::::::::::::::::::::::
XP_005 EGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
460 470 480
>>XP_016873163 (OMIM: 605047,616345) PREDICTED: interfer (210 aa)
initn: 1464 init1: 1464 opt: 1464 Z-score: 895.5 bits: 174.0 E(85289): 3.8e-43
Smith-Waterman score: 1464; 100.0% identity (100.0% similar) in 210 aa overlap (294-503:1-210)
270 280 290 300 310 320
pF1KB9 PHQAEPYLSPSPSACTAVQEPSPGALDVTIMYKGRTVLQKVVGHPSCTFLYGPPDPAVRA
::::::::::::::::::::::::::::::
XP_016 MYKGRTVLQKVVGHPSCTFLYGPPDPAVRA
10 20 30
330 340 350 360 370 380
pF1KB9 TDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDPQQVAFPSPAELPDQKQLRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGP
40 50 60 70 80 90
390 400 410 420 430 440
pF1KB9 PGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGSASPSTPACLLPRNCDTPIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRP
100 110 120 130 140 150
450 460 470 480 490 500
pF1KB9 KEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEKSLVLVKLEPWLCRVHLEGTQREGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
160 170 180 190 200 210
>>XP_011514464 (OMIM: 607218,612245,612251) PREDICTED: i (488 aa)
initn: 467 init1: 167 opt: 394 Z-score: 254.6 bits: 56.6 E(85289): 1.9e-07
Smith-Waterman score: 618; 30.5% identity (53.9% similar) in 492 aa overlap (1-480:7-435)
10 20 30 40 50
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE
.: .: : :: . ::.....: : ::::.. . : .::.: .:. :.
XP_011 MNQSIPVAPTPPR---RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 -ADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG
.: :::::: :.. ..: .. :. : ::.:.:::: ..: : .. :.
XP_011 DGDNTIFKAWAKETGKY---TEG------VDEADPAKWKANLRCALNKSRDFRLIYDGPR
60 70 80 90 100
120 130 140 150 160 170
pF1KB9 D-PADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGP-FLAHTHAGLQAPGP
: : .:.:.: :.: .:: ::. ::. : . . ::
XP_011 DMPPQPYKIY----EVC-SNGP--------APTDSQPPEDYSFGAGEEEEEEEELQR--M
110 120 130 140 150
180 190 200 210 220 230
pF1KB9 LPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLP
::. . . ..: : .. . . :: : : :: :
XP_011 LPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPP----------------PGNP
160 170 180 190
240 250 260 270 280
pF1KB9 AG--ELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGAL
:: :: . ..: ::: ::.: : . .: : : :: .. :
XP_011 AGFRELLSEVLE----PGPLPASL-------PPAGEQLLPDLLISPHMLPLTD------L
200 210 220 230 240
290 300 310 320 330 340
pF1KB9 DVTIMYKGRTVLQKVVGHP-SCTFLYGPPDPA---VRATDP---QQVAFPSPAELPDQKQ
.. ..:.:: ....: .: ..:. . . :. : .:: :::: ..:..::
XP_011 EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ
250 260 270 280 290 300
350 360 370 380 390 400
pF1KB9 LRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDT
::..:: . :: :.:.: .:.: :. .:::.: .:: .:: : : . :. :
XP_011 RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPNPI-QREVKT
310 320 330 340 350
410 420 430 440 450 460
pF1KB9 PIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHL
.:... :..::. :. : : . :.. ::.. .:.::.:. :.. : :. :
XP_011 KLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLL
360 370 380 390 400 410
470 480 490 500
pF1KB9 EGTQREGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
: . : : :: :..
XP_011 EMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQ
420 430 440 450 460 470
>>XP_011514465 (OMIM: 607218,612245,612251) PREDICTED: i (488 aa)
initn: 467 init1: 167 opt: 394 Z-score: 254.6 bits: 56.6 E(85289): 1.9e-07
Smith-Waterman score: 618; 30.5% identity (53.9% similar) in 492 aa overlap (1-480:7-435)
10 20 30 40 50
pF1KB9 MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSE
.: .: : :: . ::.....: : ::::.. . : .::.: .:. :.
XP_011 MNQSIPVAPTPPR---RVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 -ADARIFKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSG
.: :::::: :.. ..: .. :. : ::.:.:::: ..: : .. :.
XP_011 DGDNTIFKAWAKETGKY---TEG------VDEADPAKWKANLRCALNKSRDFRLIYDGPR
60 70 80 90 100
120 130 140 150 160 170
pF1KB9 D-PADPHKVYALSRELCWREGPGTDQTEAEAPAAVPPPQGGPPGP-FLAHTHAGLQAPGP
: : .:.:.: :.: .:: ::. ::. : . . ::
XP_011 DMPPQPYKIY----EVC-SNGP--------APTDSQPPEDYSFGAGEEEEEEEELQR--M
110 120 130 140 150
180 190 200 210 220 230
pF1KB9 LPAPAGDKGDLLLQAVQQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLP
::. . . ..: : .. . . :: : : :: :
XP_011 LPSLSLTEDVKWPPTLQPPTLQPPVVLGPPAPDPSPLAPP----------------PGNP
160 170 180 190
240 250 260 270 280
pF1KB9 AG--ELYGWAVETTPSPGPQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGAL
:: :: . ..: ::: ::.: : . .: : : :: .. :
XP_011 AGFRELLSEVLE----PGPLPASL-------PPAGEQLLPDLLISPHMLPLTD------L
200 210 220 230 240
290 300 310 320 330 340
pF1KB9 DVTIMYKGRTVLQKVVGHP-SCTFLYGPPDPA---VRATDP---QQVAFPSPAELPDQKQ
.. ..:.:: ....: .: ..:. . . :. : .:: :::: ..:..::
XP_011 EIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQ
250 260 270 280 290 300
350 360 370 380 390 400
pF1KB9 LRYTEELLRHVAPGLHLELRGPQLWARRMGKCKVYWEVGGPPGSASPSTPACLLPRNCDT
::..:: . :: :.:.: .:.: :. .:::.: .:: .:: : : . :. :
XP_011 RFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFW--SGPCASAHDSCPNPI-QREVKT
310 320 330 340 350
410 420 430 440 450 460
pF1KB9 PIFDFRVFFQELVEFRARQRRGSPRYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVHL
.:... :..::. :. : : . :.. ::.. .:.::.:. :.. : :. :
XP_011 KLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLL
360 370 380 390 400 410
470 480 490 500
pF1KB9 EGTQREGVSSLDSSSLSLCLSSANSLYDDIECFLMELEQPA
: . : : :: :..
XP_011 EMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQRLQPVAQAPPGAGLGVGQ
420 430 440 450 460 470
503 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:28:57 2016 done: Sat Nov 5 01:28:58 2016
Total Scan time: 9.910 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]